Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2069 | ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCAAACCAGAGGTCATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACTGTGGATGATCCAGCTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCAGCAGCGTTCGTGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACGCTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGTAGGCACGAACTTGGCAATATCAGATGTCTAGCGTTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCGTATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAGTCGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTTAAATCAAACCCTCAAGAAGTTGAAAATGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCTTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGTCTACATAGCTTTTTTGCGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTCGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTACCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAATATGGCGCTCTTCTTCTCCGGTGGCGACCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA | 918 | 45.1 | MASGSPYFDDMRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39178006 | 39179662 | - | Lag0029456.1 | Lac8g2069 | 617903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2069 | 305 | Pfam | Sina, zinc finger | 106 | 181 | - | - | |
Lac8g2069 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Lac8g2069 | 305 | Pfam | Sina, TRAF-like domain | 201 | 298 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Lac8g2069 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 109 | IPR013083 | - | |
Lac8g2069 | 305 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 57 | 92 | IPR049548 | - | |
Lac8g2069 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Lac8g2069 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Lac8g2069 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - | |
Lac8g2069 | 305 | SUPERFAMILY | RING/U-box | 49 | 97 | - | - | |
Lac8g2069 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Lac8g2069 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 39 | 300 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Lac8g2069 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | IPR008974 | GO:0005515(InterPro) | |
Lac8g2069 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 166 | 298 | - | - | |
Lac8g2069 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270(InterPro) | |
Lac8g2069 | 305 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Lac8g2069 | 305 | CDD | Sina | 171 | 299 | - | - | |
Lac8g2069 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0746 | Lac-Chr13:5823561 | Lac8g2069 | Lac-Chr8:39178006 | 2.40E-166 | dispersed | |
Lac5g3041 | Lac-Chr5:48308721 | Lac8g2069 | Lac-Chr8:39178006 | 4.10E-136 | dispersed | |
Lac5g3042 | Lac-Chr5:48312599 | Lac8g2069 | Lac-Chr8:39178006 | 3.50E-135 | dispersed | |
Lac8g2069 | Lac-Chr8:39178006 | Lac9g2895 | Lac-Chr9:46835838 | 2.80E-123 | dispersed | |
Lac8g2069 | Lac-Chr8:39178006 | Lac12g0956 | Lac-Chr12:10487448 | 1.40E-119 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2069 | K04506 | - | csv:101220834 | 640.188 |