Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2069 ATGGCATCTGGAAGTCCTTATTTTGATGATATGCGGAGCAAACCAGAGGTCATTGATCCTCCCCAAAATGAAGATATGATGGACATCAGGGAAACTGTGGATGATCCAGCTCAAAATGAACTTAAACCTAATGTTGCTGTTTCCAGCAGCGTTCGTGAGCTTTTGGAATGCCCGGTGTGTTTGAATGCAATGTACCCTCCAATACATCAGTGTTCAAATGGTCACACGCTGTGTTCTGGTTGCAAGCCTAGGGTGCACAATCGGTGCCCTACGTGTAGGCACGAACTTGGCAATATCAGATGTCTAGCGTTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCAGAGCTATGGTTGCATTGGCATATATCCGTATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGTTGTCCATATGCTGGATCAGAATGTTCAGTCGTTGGTGATATACCCTATTTGGTGGCCCACCTGAAAGATGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTTAAATCAAACCCTCAAGAAGTTGAAAATGCAACATGGATGCTAACGGTTTTCAGTTGCTTTGGTCAATACTTTTGCTTGCATTTCGAAGCTTTCCAGCTCGGAATGGCTCCAGTCTACATAGCTTTTTTGCGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTCGAGGTGGGTGGAAATGGGAGGAAGATGGTATGGCAAGGGGTACCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGTTTCGATGGGCTCATTATCCAACGCAATATGGCGCTCTTCTTCTCCGGTGGCGACCGGAAGGAACTAAAGCTTAGGGTGACTGGTAGAATTTGGAAAGAACAGTGA 918 45.1 MASGSPYFDDMRSKPEVIDPPQNEDMMDIRETVDDPAQNELKPNVAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39178006 39179662 - Lag0029456.1 Lac8g2069 617903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2069 305 Pfam Sina, zinc finger 106 181 - -
Lac8g2069 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Lac8g2069 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac8g2069 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 109 IPR013083 -
Lac8g2069 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Lac8g2069 305 CDD RING-HC_SIAHs 55 93 - -
Lac8g2069 305 SUPERFAMILY TRAF domain-like 110 302 - -
Lac8g2069 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Lac8g2069 305 SUPERFAMILY RING/U-box 49 97 - -
Lac8g2069 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Lac8g2069 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac8g2069 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
Lac8g2069 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Lac8g2069 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
Lac8g2069 305 MobiDBLite consensus disorder prediction 1 23 - -
Lac8g2069 305 CDD Sina 171 299 - -
Lac8g2069 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0746 Lac-Chr13:5823561 Lac8g2069 Lac-Chr8:39178006 2.40E-166 dispersed
Lac5g3041 Lac-Chr5:48308721 Lac8g2069 Lac-Chr8:39178006 4.10E-136 dispersed
Lac5g3042 Lac-Chr5:48312599 Lac8g2069 Lac-Chr8:39178006 3.50E-135 dispersed
Lac8g2069 Lac-Chr8:39178006 Lac9g2895 Lac-Chr9:46835838 2.80E-123 dispersed
Lac8g2069 Lac-Chr8:39178006 Lac12g0956 Lac-Chr12:10487448 1.40E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2069 K04506 - csv:101220834 640.188