Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2070 ATGTTGAAATTGAAGTCCAAAATTGACTATTTTTTTGGCAAAAAAATTAATGTTGTTAAATTACAAATTTTAAGAAAAAAGGGTTCGAATTTAGTGCCCCAAAAACCCACCCAGGTCCAATTTCAACCCGAAATAGGAAAACAAGAAAAGGGCAGAGAAGGAGAAGAAGAAGAAGAGAGAACTGAAGAACTTCTCACCTTCGACTTCCAGTTCCAGAACGAAGCCCAGATTCCATTGCTGCAGCTCGCACCGGAGCTTCCTTCCAATATCTTCATCTCTGTAACCGGCGGCAACCCTCTTCTTCCCCATTTCATTCTTCCATATTCGCTGATTATGCCAGACGTGCAAGCCCTTGTGAATGATTTCGTTATCAAGCTCAAGAAACGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTGAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACAAATCAGGCGGCTGCTTTGATTGATGCTGTGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGAGCTTGCTGTGGGTAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATCTTTCTCTCACCACAGCTTCTATAGCTGGGTTGAGCTTAGCAGCAGTTAGTGATGATGAAGATGACAGTGAAAAAGATGATCGCCCGGCCCTCTCAGCTGCTGCTGTTGCAGCTGCTGCAAGAAGCACTTTGCGGCCGCCTTCCTTGCAGACTCTTCTTGAGGACGTTCCTAACCAAGCATCTGTTCATCAAACTTCATCATCTGGAGGTGATTCAGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCGAGGAGTCGGAAACTCAAGCATGATGTAATTGAAGCTGTTAATGAACTTATTCAGGATATTGCAACTTGTCATGAACAGATTGCTGAGCAAGCAGTGGAACACATCCATCAAAAGTTTCCCAACTCAAGGCTTGGAAACTTGCTTTCCAATCACTTGTCGGCTGAACTGAATTCTAAGCTTGAACACTCCCTAACATGGCTTGGAGAATGGGAGTTCCAGCTCTTCAGTCTCTTCTCCTTTGCTAAAGAAATTCTGGTTCGAAAGATTTCAAAGCGAGGTAATATTAACTCTGGGGAGTTCCAGAACAGTATTGGAATTTCTTTGTGCTGCCAAGGAGAAGAAAGGTCCTTCCGTGTGTTTGTTGCTGAAGGTGCTCCAAGATACCAGGGTCATCTTCTTGCTAAGGAGTTGGTTACAAGAGGTTTACAAACCACACTTATTACTGATTCTGCAGTTTTTGCCATGATCTCCGGTGAGACGGACATGAAAACTGATGAGATAGCTTCATCTTCAAATCTGTTCTGCAAGGTAATAGTTGGTGCTCATGCTGTCATGGCAAATGGTGGTGTCATGGCACCTGTCGGATTGAATATGGTGGCCCTTGCAGCTAAAAGGCATGCTGTTCCTTTTGTTGTACTAGCTGGAAGTCACAAGTTGTGCCCTTTGTATCCTCACAATCCTGAAGTTCTACTCAATGAACTGAGATCCCCGTCAGAGCTACTGGACTTCGGTGAATTTTCAGATTGCATGGACTTTGGAACTAACACTGGTTCTCCTCTTCTCCATGTAGTCAACCCTACGTTTGACTATGTGCCACCATCACTTGTTAGTTTATTTATTACTGATACAGGTGGCCATAACTCATCATACATGTATCGGCTTATTGCTGATTATTATTCAGCTGATGATTTGGATAAATTTCTGCCTACCTGGGCTCCAGTTCGTTGCAAACTGCATCTTGAAATGTTACAATGCCTTTCCAGTTCGCATGTTGGATATTATGCACTTTTCATTGCTTCTGTTGCGTTACTTTTCATTAAGATCAATGACCTTTCAGCGATCAACCGTTTCAGGATTGCAGTTAGCAACACAAGCGAGCTGATGAGAAGAATCATAAATTCTAGCCTCAACCATGTAGAACCATCGTCCTAG 1998 43.49 MLKLKSKIDYFFGKKINVVKLQILRKKGSNLVPQKPTQVQFQPEIGKQEKGREGEEEEERTEELLTFDFQFQNEAQIPLLQLAPELPSNIFISVTGGNPLLPHFILPYSLIMPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLTTASIAGLSLAAVSDDEDDSEKDDRPALSAAAVAAAARSTLRPPSLQTLLEDVPNQASVHQTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDIATCHEQIAEQAVEHIHQKFPNSRLGNLLSNHLSAELNSKLEHSLTWLGEWEFQLFSLFSFAKEILVRKISKRGNINSGEFQNSIGISLCCQGEERSFRVFVAEGAPRYQGHLLAKELVTRGLQTTLITDSAVFAMISGETDMKTDEIASSSNLFCKVIVGAHAVMANGGVMAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGTNTGSPLLHVVNPTFDYVPPSLVSLFITDTGGHNSSYMYRLIADYYSADDLDKFLPTWAPVRCKLHLEMLQCLSSSHVGYYALFIASVALLFIKINDLSAINRFRIAVSNTSELMRRIINSSLNHVEPSS 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39182577 39190821 - Lag0029457.1 Lac8g2070 617904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2070 665 FunFam translation initiation factor eIF-2B subunit beta 384 581 - -
Lac8g2070 665 Pfam Initiation factor 2 subunit family 130 320 IPR000649 GO:0044237(InterPro)
Lac8g2070 665 Pfam Initiation factor 2 subunit family 395 568 IPR000649 GO:0044237(InterPro)
Lac8g2070 665 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 395 586 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Lac8g2070 665 MobiDBLite consensus disorder prediction 37 58 - -
Lac8g2070 665 Gene3D - 304 580 IPR042529 -
Lac8g2070 665 SUPERFAMILY NagB/RpiA/CoA transferase-like 100 321 IPR037171 -
Lac8g2070 665 SUPERFAMILY NagB/RpiA/CoA transferase-like 395 585 IPR037171 -
Lac8g2070 665 MobiDBLite consensus disorder prediction 254 272 - -
Lac8g2070 665 MobiDBLite consensus disorder prediction 254 287 - -
Lac8g2070 665 MobiDBLite consensus disorder prediction 273 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2070 Lac-Chr8:39182577 Lac9g1280 Lac-Chr9:29548772 7.40E-44 dispersed
Lac8g2070 Lac-Chr8:39182577 Lac7g2184 Lac-Chr7:35915515 1.40E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2070 K03754 - cit:102624845 585.489