Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2087 ATGGGCAAGAAGAAGGGCTGGTTCTATTTAGTCAAGAAGCTATTTGTTGCAGAGACAGAGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGATTAGCCACACTAACAGCACCATCACCACCAAAAGTGACGATGAGACGAGAGGAGGAAGAAGAGGAAGAGGAGAGGAAACAGGCTCTTTCTGTGGCCATTGCAAGTACCGCAGCCGCCGAAGCGGCGGTTGCGGCAGCCAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCGCTCAATCTAATCAACAAGAGGCTGCAGATGAAGCCTTTAAACCTCACAAGAAGGCCCCTCCATATGATCTCCATAAACGTGAAAGGGAAATCCATGAGTTTGCTGCCATTATTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGGAAAGCATTGAGAGCACTGAAAGGAATAGTGAGGCTACAGGCAATCATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATCGACTCCATCCTCCTCAAAACACTTTCAATTCTCCTGAAACCAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGGTCAAAGGTGGGATGATAGCCTGCTATCAAAAGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGGAGAGAACGAGTCAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGACCGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTAGACTCCATTTTCACCTCAAATCCAAAACACAAAGAGACAGAAGGATTCAAACCAACCCCAACAACAAAAAACATGGACAGAGCCATAGAACTCCCCAACCAATCTCCATCTCAAAAACCAGCACTGAAAAAGCTCTCTCACCACCAGAAGCAGCGTTCATTGGGGGGCGGCATGGACTCACACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCAGCCACAGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGGATTGGACACATGCTCGGATGGGAATTCGCCATGCAAGATAAAGCAGCTCAGTTTGGTGTCATCAATGGCGAGTGAAGTGGCAATTAGCAGCAGCAGAAGGGGTTTTCAGCAGCAGAGGTCACCGGGGCTGAAGGGGCTGCCAGGGCCTACAAGATCAAGCAGAACTCTCACAAAGGATTTGAGTATTGATTCTGAGCATTCGTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1419 48.2 MGKKKGWFYLVKKLFVAETEPKPEKKQKRWKWVFGRMRNKRLATLTAPSPPKVTMRREEEEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTAQSNQQEAADEAFKPHKKAPPYDLHKREREIHEFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHPPQNTFNSPETKQLQSLKDKIIKLDSNGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESDRKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETEGFKPTPTTKNMDRAIELPNQSPSQKPALKKLSHHQKQRSLGGGMDSHSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKIKQLSLVSSMASEVAISSSRRGFQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39343750 39346963 - Lag0029474.1 Lac8g2087 617921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2087 472 ProSiteProfiles IQ motif profile. 155 182 - -
Lac8g2087 472 Gene3D - 131 181 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 444 472 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 421 472 - -
Lac8g2087 472 Pfam Protein of unknown function (DUF4005) 353 432 IPR025064 -
Lac8g2087 472 MobiDBLite consensus disorder prediction 328 363 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 378 404 - -
Lac8g2087 472 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Lac8g2087 472 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515(InterPro)
Lac8g2087 472 PANTHER IQ-DOMAIN 5-RELATED 12 408 - -
Lac8g2087 472 ProSiteProfiles IQ motif profile. 131 159 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 46 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2087 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2061 Lac-Chr7:33503419 Lac8g2087 Lac-Chr8:39343750 9.90E-27 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac3g1549 Lac-Chr3:14563680 1.50E-19 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac8g2437 Lac-Chr8:42431493 5.70E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35