Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2087 ATGGGCAAGAAGAAGGGCTGGTTCTATTTAGTCAAGAAGCTATTTGTTGCAGAGACAGAGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGATTAGCCACACTAACAGCACCATCACCACCAAAAGTGACGATGAGACGAGAGGAGGAAGAAGAGGAAGAGGAGAGGAAACAGGCTCTTTCTGTGGCCATTGCAAGTACCGCAGCCGCCGAAGCGGCGGTTGCGGCAGCCAAGGCTGCTGTTGAGGTTGTGTGGCTCACAGGGACCGCTCAATCTAATCAACAAGAGGCTGCAGATGAAGCCTTTAAACCTCACAAGAAGGCCCCTCCATATGATCTCCATAAACGTGAAAGGGAAATCCATGAGTTTGCTGCCATTATTATCCAAACTGCTTTCCGTGGCTTCCTTGCGAGGAAAGCATTGAGAGCACTGAAAGGAATAGTGAGGCTACAGGCAATCATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATCGACTCCATCCTCCTCAAAACACTTTCAATTCTCCTGAAACCAAGCAGTTGCAGAGCTTGAAAGATAAGATTATAAAGTTGGATTCGAACGGTCAAAGGTGGGATGATAGCCTGCTATCAAAAGAAGAAGCCGATGCAGTGTTTTTGAGCAGGAAAGAGGCAGTGATCAGGAGAGAACGAGTCAAGGAATACTTATTCGCCCACAGGAGATCTGCAGAATCAGACCGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTAGACTCCATTTTCACCTCAAATCCAAAACACAAAGAGACAGAAGGATTCAAACCAACCCCAACAACAAAAAACATGGACAGAGCCATAGAACTCCCCAACCAATCTCCATCTCAAAAACCAGCACTGAAAAAGCTCTCTCACCACCAGAAGCAGCGTTCATTGGGGGGCGGCATGGACTCACACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCAGCCACAGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCGCCAAAGCTGAGGCCAGCAGGGGGATTGGACACATGCTCGGATGGGAATTCGCCATGCAAGATAAAGCAGCTCAGTTTGGTGTCATCAATGGCGAGTGAAGTGGCAATTAGCAGCAGCAGAAGGGGTTTTCAGCAGCAGAGGTCACCGGGGCTGAAGGGGCTGCCAGGGCCTACAAGATCAAGCAGAACTCTCACAAAGGATTTGAGTATTGATTCTGAGCATTCGTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1419 48.2 MGKKKGWFYLVKKLFVAETEPKPEKKQKRWKWVFGRMRNKRLATLTAPSPPKVTMRREEEEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTAQSNQQEAADEAFKPHKKAPPYDLHKREREIHEFAAIIIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHPPQNTFNSPETKQLQSLKDKIIKLDSNGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESDRKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETEGFKPTPTTKNMDRAIELPNQSPSQKPALKKLSHHQKQRSLGGGMDSHSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKIKQLSLVSSMASEVAISSSRRGFQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39343750 39346963 - Lag0029474.1 Lac8g2087 617921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2087 472 ProSiteProfiles IQ motif profile. 155 182 - -
Lac8g2087 472 Gene3D - 131 181 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 444 472 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 421 472 - -
Lac8g2087 472 Pfam Protein of unknown function (DUF4005) 353 432 IPR025064 -
Lac8g2087 472 MobiDBLite consensus disorder prediction 328 363 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 378 404 - -
Lac8g2087 472 SMART iq_5 130 152 IPR000048 GO:0005515(InterPro)
Lac8g2087 472 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515(InterPro)
Lac8g2087 472 PANTHER IQ-DOMAIN 5-RELATED 12 408 - -
Lac8g2087 472 ProSiteProfiles IQ motif profile. 131 159 - -
Lac8g2087 472 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2061 Lac-Chr7:33503419 Lac8g2087 Lac-Chr8:39343750 9.90E-27 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac3g1549 Lac-Chr3:14563680 1.50E-19 dispersed
Lac8g2087 Lac-Chr8:39343750 Lac8g2437 Lac-Chr8:42431493 5.70E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2087 - - - 0.0