Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2104 | ATGGGCGTTGCTGTTGAAACCACGCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCTGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCGTGCTCACGACGATGAACAACGCGACCACTCCAAAATCGCCCCGCCCTCGAATCTTCATCCTAATTCGCGACAGGAGGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGAGCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACGTTCCTTCGAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCAACCAGGAATTGA | 492 | 45.33 | MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDEQRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 39471731 | 39472420 | - | Lag0029491.1 | Lac8g2104 | 617938 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2104 | 163 | ProSiteProfiles | Response regulatory domain profile. | 11 | 156 | IPR001789 | GO:0000160(InterPro) | |
| Lac8g2104 | 163 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 7 | 159 | IPR045279 | GO:0009736(InterPro) | |
| Lac8g2104 | 163 | Pfam | Response regulator receiver domain | 79 | 149 | IPR001789 | GO:0000160(InterPro) | |
| Lac8g2104 | 163 | SMART | REC_2 | 10 | 152 | IPR001789 | GO:0000160(InterPro) | |
| Lac8g2104 | 163 | CDD | REC_typeA_ARR | 12 | 151 | - | - | |
| Lac8g2104 | 163 | SUPERFAMILY | CheY-like | 9 | 152 | IPR011006 | - | |
| Lac8g2104 | 163 | Gene3D | - | 11 | 162 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g1253 | Lac-Chr13:11307543 | Lac8g2104 | Lac-Chr8:39471731 | 2.80E-39 | dispersed | |
| Lac1g1457 | Lac-Chr1:35293500 | Lac8g2104 | Lac-Chr8:39471731 | 2.30E-52 | dispersed | |
| Lac2g0939 | Lac-Chr2:7392125 | Lac8g2104 | Lac-Chr8:39471731 | 1.70E-44 | dispersed | |
| Lac3g0664 | Lac-Chr3:5168454 | Lac8g2104 | Lac-Chr8:39471731 | 1.80E-37 | dispersed | |
| Lac8g1837 | Lac-Chr8:36649279 | Lac8g2104 | Lac-Chr8:39471731 | 2.20E-43 | dispersed | |
| Lac8g2104 | Lac-Chr8:39471731 | Lac10g2145 | Lac-Chr10:31908164 | 2.50E-54 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24312 | PF00072 | Response_reg | 7.00E-16 | CL0304 | Lac | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2104 | K14492 | - | csv:101210839 | 265.388 |