Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2136 ATGGAAATTAGGAGAGAAAATGGGTTACTGCCTTGTTTGGCTTTCTTTTGGTTATGGGCTTCTGTAAGTTCGGCTTCAACAGCCAAAGATTTAGACTCTGAAGTTCAAGCTTTGATGGGGATCAAAGCTACTTTGAAGGATCCTCATTCAGTTCTGACTTGGGATGAAAATGCTGTGGATCCATGCACTTGGAATTTGATCACTTGTTCTCCTGATAAACTTGTCATTGGCATAGGAGCTCCAAGCCAAAACTTATCTGGTACACTCTCACCAAGTATTGGAAATTTGACAAACCTCCAATTTCTGCTTCTTCAGGATAACAATATATCAGGAAAAATTCCAAACGAAATTAGCAAGATTCCTAGACTTCATACACTTGATCTTTCCAGCAACCTGCTCTCTGGTGAAATTCCCAGCTCTTTCTCCAATATGAAAAGCCTCCAATACCTGAGACTCAACAATAACACCTTCTCTGGGCCAATACCGTCATCACTGGCTAACATGACCCAGCTTGCCTTGCTGGACCTGTCCTATAATAACTTGAGCGGTCCTGTGCCCAGATTGCTGGCTAAGACATTTAACTTTACTGGAAACTCTTTGATTTGTGACCCTGGAACAAAGGAAGTATGCTATGGAACAACTCCATTGCCACTTTCTTTCGCTGTTGCTAATTCCACATACTCCCAACCTCAAAGGAGACATAAAGGCCAGAGAATTGCCTTAGTCATTGGTCTTAGCTTGGGTTGCATCTGTCTGATAACTCTTGTATATGGTTTCTTTATCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTCGAAGATCGGATCCGGGAAGAACTTAGCCTAGGGAATGTAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCCACTCACAACTTCAGCAGTAAGAACTTGATTGGAAAAGGTGGTTTTGGAAATGTATACAGAGGATATCTACAAGATGGCACCATTGTAGCTGTCAAGAGACTCAAAGATGGGAACGCTATGAGAGGAGAGATCCAGTTTCAGACTGAAGTGGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAGGTTGTATGGTTTTTGTATGACAGAAACCGAGAGGCTTTTGGTCTATCCATATATGTCCAATGGCAGTGTCGCTACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGGGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTAGGGGCTTGTTATACTTACATGAACAGTGTGATCCAAAAATAATTCACAGGGATGTGAAAGCTGCAAATATACTGCTTGATGATTTCTGTGAGGCAGTGGTCGGTGATTTCGGGCTGGCAAAGCTGTTAGATCACACAGATTCACATGTCACTACTGCAGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTGTCAACTGGCCAATCCTCAGAGAAAACAGATGTTTTTGGGTTTGGAATTCTATTACTTGAGCTCGTATCAGGTCAAAGAGCTCTCGAATTTGGAAAAGCAGCAAACCAAAAGGGTGCAATACTGGACTGGATAAAGAAGCTACACCAAGAAAAGAAGCTAGAAATGCTTGTTGACAAAGACTTGAGAGGCAATTACGACCCAATTGAACTTGAAGAAATTGTTCGAGTAGCTCTCTTGTGCATCCAATATCTTCCAAGCCACAGGCCTAAGATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTGGCAGAGAAATGGGAAGCTTCCCAAAGAGCAGAAGCAAGCAGGGGCAGAGCCAACGAGTTCTCGTCCTCGGAACGTTACTCTGATCTTACTGATGACTCTTCATTGTTTGCTCAAGCAATAGAGCTCTCGGGACCAAGATAA 1866 43.57 MEIRRENGLLPCLAFFWLWASVSSASTAKDLDSEVQALMGIKATLKDPHSVLTWDENAVDPCTWNLITCSPDKLVIGIGAPSQNLSGTLSPSIGNLTNLQFLLLQDNNISGKIPNEISKIPRLHTLDLSSNLLSGEIPSSFSNMKSLQYLRLNNNTFSGPIPSSLANMTQLALLDLSYNNLSGPVPRLLAKTFNFTGNSLICDPGTKEVCYGTTPLPLSFAVANSTYSQPQRRHKGQRIALVIGLSLGCICLITLVYGFFIWRKHRHNQQIFFEDRIREELSLGNVKRFQFRELQNATHNFSSKNLIGKGGFGNVYRGYLQDGTIVAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTETERLLVYPYMSNGSVATRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHTDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELVSGQRALEFGKAANQKGAILDWIKKLHQEKKLEMLVDKDLRGNYDPIELEEIVRVALLCIQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEASRGRANEFSSSERYSDLTDDSSLFAQAIELSGPR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39798820 39801871 + Lag0029523.1 Lac8g2136 617970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2136 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2136 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Lac8g2136 621 SMART serkin_6 301 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2136 621 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Lac8g2136 621 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515(InterPro)
Lac8g2136 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Lac8g2136 621 MobiDBLite consensus disorder prediction 589 603 - -
Lac8g2136 621 FunFam Somatic embryogenesis receptor kinase 1 271 377 - -
Lac8g2136 621 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Lac8g2136 621 Pfam Protein tyrosine and serine/threonine kinase 304 570 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2136 621 Pfam Leucine rich repeat 121 181 IPR001611 GO:0005515(InterPro)
Lac8g2136 621 SUPERFAMILY L domain-like 33 200 - -
Lac8g2136 621 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Lac8g2136 621 Gene3D Phosphorylase Kinase; domain 1 273 377 - -
Lac8g2136 621 FunFam Somatic embryogenesis receptor-like kinase 1 378 590 - -
Lac8g2136 621 ProSiteProfiles Protein kinase domain profile. 301 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2136 621 SUPERFAMILY Protein kinase-like (PK-like) 281 571 IPR011009 -
Lac8g2136 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 621 - -
Lac8g2136 621 MobiDBLite consensus disorder prediction 581 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2136 Lac-Chr8:39798820 Lac8g2791 Lac-Chr8:45141079 4.10E-222 dispersed
Lac13g0429 Lac-Chr13:3016255 Lac8g2136 Lac-Chr8:39798820 1.30E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86380 PF00069 Pkinase 2.10E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2136 - - - 0.0