Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2147 | ATGAATGGGAAGGATGATTTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTAATCTCACTAATGAGTCTGGGGGATTCGTTTCGACCGGGAATCCTTCAGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTTACTTCAACCCTTTTGAACCATCATACCGACTCGCAAAACTCGGGATTCTGCAGCACCTTTAATGAACAAAACAGCATAGTTGCTTCTGATACAACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAGTAGTGATAGAATGCTGGGTATGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTCTCAGCAAATGTTCCTGGAATGTTTCCAGCTAATTTGTCTCAACTACCAGCCGATTCGGCATTCATAGAACGTGCAGCACGGTTTTCCTGCTTCAATAGTGGAGTTTTTGGGGCTCCGCCTGCCGGTCCATTTGGTATTTCAGACTCTATAGGCGTCCATTCTAGGGGTGCATTTGGAAGGCAAGAAGTTATTTCCAGAAATGGAACCTCCAAAGATGTTTCTTTGCCCATGGAGCTTGAGGCTAATGAAAAGGGTCCACCAAAGAATGAGAAAGAAAGTGAGATGTCTCAAGACAGGGCTAAACAAGGTTGTGTTGGTGAGTCTGGTAATGAATCTGATGAAGCTGGGTTTAGTGGTGGTCAAGACGAGCGATGCACATTGGGGGGTACTATCGCAGAACCATCAACAGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGATCAGAATATGGGACTTGGTCAAGTTAAAGAAGCTCCGCAACAAATTAACGAAACTGCAAAGAATGGGGCATCAAATCAGCAGAAGGGAGACCAAAACCCAAGTTCTACTACTAACAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAAGCATCAGATGCTCCCAAAGAAGAATATATCCATGTTAGAGCACGAAGAGGCCAGGCAACCAACAGCCATAGTCTTGCTGAAAGGGTAAGAAGAGAAAAGATAAGCGAAAGAATGAGACTCCTTCAGGACCTTGTGCCTGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTCGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTGGACTTTAACATCGAAGAGCTCCTCACAAAAGAAATCATTCAATCAAAGGCCGGTTCATCATTATTTGGTTTTCCTCCTGATCTGCCTATGCCGTACCTCCCGCAACATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAACTCCCCGGACCTGCTACGAAGAACAATCAATTCCCAGCTGACATCACTTGTTAGTGGTTTCAAGGAGCCTGTTCAGCTACCGAACATGTGGGAGAATGATCTCCACAATGTCGTCCCGATGAACTTTGACGTCGCTGCACCCTCCAATGGTCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA | 1599 | 44.97 | MNGKDDFEVESRTSDPMSISSGWQFAAANLTNESGGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTDSQNSGFCSTFNEQNSIVASDTTVVDGEGLNSLRSSSDRMLGMDWNQQNPWMKGVFSANVPGMFPANLSQLPADSAFIERAARFSCFNSGVFGAPPAGPFGISDSIGVHSRGAFGRQEVISRNGTSKDVSLPMELEANEKGPPKNEKESEMSQDRAKQGCVGESGNESDEAGFSGGQDERCTLGGTIAEPSTEGLCFKKRKRGDQNMGLGQVKEAPQQINETAKNGASNQQKGDQNPSSTTNKPAGKQGKQDSQASDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKEIIQSKAGSSLFGFPPDLPMPYLPQHPSHHGLIPPCLPNMGNSPDLLRRTINSQLTSLVSGFKEPVQLPNMWENDLHNVVPMNFDVAAPSNGQDVDGSTPQCNTRAEL | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 39867065 | 39869762 | + | Lag0029534.1 | Lac8g2147 | 617981 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 512 | 532 | - | - | |
| Lac8g2147 | 532 | FunFam | Basic helix-loop-helix transcription factor | 343 | 415 | - | - | |
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 297 | 333 | - | - | |
| Lac8g2147 | 532 | SMART | finulus | 352 | 402 | IPR011598 | GO:0046983(InterPro) | |
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 191 | 263 | - | - | |
| Lac8g2147 | 532 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 344 | 415 | IPR036638 | GO:0046983(InterPro) | |
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 297 | 327 | - | - | |
| Lac8g2147 | 532 | Gene3D | - | 343 | 417 | IPR036638 | GO:0046983(InterPro) | |
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 516 | 532 | - | - | |
| Lac8g2147 | 532 | MobiDBLite | consensus disorder prediction | 213 | 228 | - | - | |
| Lac8g2147 | 532 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 346 | 396 | IPR011598 | GO:0046983(InterPro) | |
| Lac8g2147 | 532 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 143 | 449 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Lac8g2147 | 532 | CDD | bHLH_AtBPE_like | 336 | 421 | - | - | |
| Lac8g2147 | 532 | Pfam | Helix-loop-helix DNA-binding domain | 349 | 397 | IPR011598 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0427 | Lac-Chr2:3116135 | Lac8g2147 | Lac-Chr8:39867065 | 2.60E-44 | dispersed | |
| Lac3g0471 | Lac-Chr3:3582503 | Lac8g2147 | Lac-Chr8:39867065 | 4.00E-28 | dispersed | |
| Lac4g1456 | Lac-Chr4:33028543 | Lac8g2147 | Lac-Chr8:39867065 | 6.30E-47 | dispersed | |
| Lac6g0225 | Lac-Chr6:1793054 | Lac8g2147 | Lac-Chr8:39867065 | 1.90E-38 | dispersed | |
| Lac7g1062 | Lac-Chr7:9396666 | Lac8g2147 | Lac-Chr8:39867065 | 1.40E-48 | dispersed | |
| Lac8g2147 | Lac-Chr8:39867065 | Lac9g1686 | Lac-Chr9:36435577 | 1.00E-35 | dispersed | |
| Lac4g1936 | Lac-Chr4:38823496 | Lac8g2147 | Lac-Chr8:39867065 | 1.10E-39 | transposed | |
| Lac13g0418 | Lac-Chr13:2925494 | Lac8g2147 | Lac-Chr8:39867065 | 1.20E-119 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 24315 | PF00010 | HLH | 6.50E-06 | No_clan | Lac | TF |
Pathway information