Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2187 ATGGTTCTTTCGAAAACATTCTCAGAATCGGATGTGTCGATACATTCGACATTCGCGTCTCGGTACGTGCGGGACTCTGCTCCAAGGTTCAGCATGCCCGAGAACTCCATGCCGAAGGAGGCCGCCTTTCAGATCATCAACGACGAGCTCATGCTCGACGGCAACCCACGCCTCAATTTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAATGCGACAAGCTCATCATGGACTCTGTCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACCGAGCTCCAGAACCGCTGCGTCAACATGATTGCCCACCTCTTCAACGCTCCCTTGGGAGACTCCGACGCCGCCGTCGGAGTCGGCACCGTCGGCTCCTCGGAGGCCATCATGCTGGCCGGGCTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGCAAGGCAGAGGGCAAGCCTTACGACAGGCCCAACATCGTGACCGGCGCCAACGTGCAGGTGTGTTGGGAGAAATTTGCGAGATACTTCGAGGTGGAGCTCAAGGAAGTGAAGGTGAGAGAAGGGTATTACGTGATGGACCCTCAAAAGGCGGTTGAGATGGTGGATGAGAACACCATCTGCGTTGCCGCCATTTTGGGCTCCACTTACAACGGCGAATTTGAAGACGTCAAGCTGCTCAACGATCTGCTGCTGGAGAAGAACAGGGAAACGGGATGGGACACGCCCATTCACGTGGATGCAGCCAGCGGTGGGTTCATAGCCCCGTTTCTGTATCCAGAGCTCGAGTGGGACTTCAGGCTTCCATTGGTGAAGAGCATCAACGTCAGTGGCCACAAGTACGGGCTCGTCTACGCCGGAATCGGTTGGGTCATTTGGAGAAGCAAAGAGGATTTGCCGGAAGAACTGATTTTCCACATCAATTACCTCGGAGCCGATCAGCCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAGATCATAGCTCAGTATTACCAACTAATCCGCCTGGGATTTGAGGGATACCGCAATGTGATGCAGAATTGCCACGACAACGCAATGGTGTTGAAGGAAGGACTTGAAAGCACAGGGCGGTTCAGCATAGCGTCAAAGGACATGGGAGTGCCGGTGGTGGCGTTCTCTCTGAAAGACAGAAGCCGCCACGACGAGTTTGAGGTGTCAGAAATGCTGCGACGGTTCGGATGGATCGTGCCGGCATATCCAATGCCAGAGGGCGCCAAGCACGTGTCGGTTCTTCGTGTGGTGATCAGAGAAGACTTCTCCAGAACCCTTGCAGAGCGGCTGGTGCTTGATATCACAAAGGTTCTGGCAGAGCTGGATAGTCTTCCACCAAAGAACAGTGGGAAAATCACAAGCTTGGAGAGTGGGAAAAGTGAGACGGCAGTGAAGAAGACGGCAGAGGAAACAGAGAGGGAAATAGCGAGTTATTGGAGGAATATAACGAAAGCTAGGAAAATGAAGGTTGCTGCAAACCAGGCTGGTCCTTCAGTAAAGGTGGTTGCCAAATAA 1524 53.67 MVLSKTFSESDVSIHSTFASRYVRDSAPRFSMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDRPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPQKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNRETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLESTGRFSIASKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDITKVLAELDSLPPKNSGKITSLESGKSETAVKKTAEETEREIASYWRNITKARKMKVAANQAGPSVKVVAK 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40149625 40151227 + Lag0029574.1 Lac8g2187 618021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2187 507 Gene3D - 1 65 - -
Lac8g2187 507 CDD DOPA_deC_like 59 439 - -
Lac8g2187 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Lac8g2187 507 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Lac8g2187 507 PANTHER GLUTAMATE DECARBOXYLASE 1 492 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Lac8g2187 507 Gene3D - 361 448 - -
Lac8g2187 507 MobiDBLite consensus disorder prediction 452 471 - -
Lac8g2187 507 FunFam Glutamate decarboxylase 66 360 - -
Lac8g2187 507 FunFam Glutamate decarboxylase 1 65 - -
Lac8g2187 507 Gene3D - 66 360 IPR015421 -
Lac8g2187 507 FunFam Glutamate decarboxylase 361 448 - -
Lac8g2187 507 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1978 Lac-Chr8:38193435 Lac8g2187 Lac-Chr8:40149625 4.40E-243 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2187 K01580 - csv:101208026 956.822