Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2195 ATGGAAAGAAACCTCTCTCAGCTTTCTCTTCTTCCTCTTACTTTGGCAGTGGTCGTTATCTTATTTGCTTTGGCTTCTTCAGCTGAACAAGAGGTTGTGACTTCAATAAAAACTGATGCTGCAGCTCTTCTTAAGTTCAAGGATATGATTGACAAGGACCCAAATGGAGTGTTGTCCAGTTGGAAGCTTGAAAACAATCCATGTTCATGGTATGGAGTTTCATGCCAATCTGGAAGAGCAATTGCTCTTGATCTGAGTGGCTGTAGTCTTGCAGGGAATGTTTATTTTGATCCTCTGTCTTCTCTGGATATGTTGATGGCTTTGAATTTGTCTACAAATTCTTTCACTATAAACTCAACTACTTTACTTCAGCTTCCTTATAATTTGCAGCAACTTCAACTCTCTCTTGCCAAAGTTGTTGGCAGTGTGCCAGAGAATCTTTTCTCAAAGTGTCCAAATCTTGTGTTTGTGGATCTTTCATTGAACAATCTGACAGGCTATCTGCCTGAAAATCTTCTGTTGAATGCTAATAAGCTTCAAGATCTTGATCTCTCTTACAACAATTTAACTGGATCAATCTCAGGATTGAGAATTGATGAGAATTCTTGCAACTCTTTGTTGCATGTTGAACTTTCAGGTAATCGAATCATCGGTTCGATTCCGGATGCCATTTCAAACTGCACGAATCTGCAAACACTTGGTTTGTCAGAAAATCTTCTCAGTGGGGAAATCCCAAGATCTTTAGGGGAACTCAGCAGTTTACAGAGGTTGGATCTATCTCACAATCAGCTCAATGGTTGGCTCCCTTCTGATTGGAGAAATGCCTGCAATTCACTTCAAGAACTAAAGCTTTGCTACAACAACATTTCTGGCGTAATTCCAGCTTCCTTCTCTGCTTGCTCTTGGCTGCAAATTCTGGATCTTTCAAATAACAACATATCTGGTCCTTTACCAGATTCCATCTTCAAGAATCTTGTCTCTTTACAGAGCTTGCTACTGAGTAATAACATTATCTCTGGACCATTGCCTTCATCAATATCTCACTGCAAGAAACTTCAGCTTGTAGACTTAAGTTCCAATAGGATTTCTGGTTTGATTTCACCAGATATATGCCCAGGTGCTGAGTCACTCCAGGAACTGAAAATGCCAGACAACCTCATCATTGGAGGAATCCCACCTGAACTCTCACTGTGTCCACAGCTAAAGACAATTGATTTTAGTTTAAACTACCTGAATGGCTCCATACCCGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGCTGATAGCCTGGTTCAATAGCTTAGAAGGGAAAATCCCTCCAGAATTGGGGAAGTGTAAAAGCTTGAAGGATCTTATACTCAATAACAATCGTCTAAGTGGTGAAATCCCAACTGAATTGTTCAGTTGCAGCAATCTTGAATGGGTTTCACTCACGAGCAATGAACTGACTGGTGAGATCCCAAAAGAGTTTGGCCTCTTGTCTAGGCTGGCTGTTCTGCAACTCGGAAACAATAGCTTAAGTGGTCAGATACCAGCAGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGATTTGAACAGCAATAAGCTTACAGGGGAAATCCCACCTAGACTTGGCAGGCAGCTTGGAGCCAAATCATTGAATGGGATTCTTTCCGGAAACACTCTTGTGTTTGTCCGAAATGTCGGGAATTCGTGCAAAGGAGTTGGGGGTCTGTTAGAGTTTGCTGGAATTAGACCTGAAAGACTACAGCAGGAACCAACATTGAAGACCTGTGATTTCACTAGACTGTACTCTGGCCCGGTCCTCAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATGAGCTTCGTGGGAGAATACCAGAAGAGTTTGGAGATATGGTTGCCTTGCAGGTTCTTGAATTATCACACAACCAACTTTCGGGCGAGATTCCAGCATCATTTGGCCGCCTAAAGAACTTAGGAGTGTTTGATGCATCACATAACAGACTGCAGGGTCACATTCCAGATTCATTCTCAAACTTATCATTCTTAGTGCAAATTGATCTATCTTATAATGAACTAACAGGCCGAATTCCATCGAGAGGACAGCTCAGTACACTACCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCCTTGCCTGAATGCCAGAGTGAAGACCAGCCGGCGACAAGTTCTAATGTAGATGCTGGAAAAGGAAGTACAAAGCCAGAAGCAGGGTCGTGGGTTAACAGTATTGTTTTAGGCGTTCTCATTTCCATTGCCTGTGTCTGCATTTTGATTGTATGGGCCATTGCCATGCGTGCAAGACGAAAAGAAGCAGAGGAAGTGAAGATGCTTAATAGTCTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCACTGAGTATCAACGTGGCAACTTTCCAAAGACAACTAAGGAAGCTTAAGTTCTCCCAACTGATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTCATAGGGAGTGGCGGGTTTGGTGAAGTGTTTAAAGCAACATTGAAGGATGGATCAAGTGTTGCAATCAAGAAATTAATACGTCTTAGTTGCCAGGGAGATCGTGAATTCATGGCGGAGATGGAAACTTTAGGAAAGATCAAACATGGAAATCTCGTACCTCTTCTTGGTTACTGTAAAATAGGCGAGGAGAGGCTTCTAGTGTATGAGTTCATGGAGTTTGGTAGCCTAGAAGAGATGCTCCATGGAAGAGCAAAGATGCAAGATAGAAGAATTCTAACATGGGATGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTCTGTTTCCTACACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCCAGCAATGTACTCTTGGACCATGATTTAGAAGCAAGAGTTTCAGATTTTGGAATGGCAAGGCTGATAAGTGCTCTGGACACCCATCTGAGTGTAAGCACACTTGCAGGCACTCCTGGTTACGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGACGTCTATTCGTTCGGTGTCGTCCTCTTAGAACTTTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGATACCAACTTGGTGGGATGGGTCAAAATGAAAGTGAGTGATGGAAAACAAATGGAAGTGATAGATCCAGAGTTGCTTTCAGTGACCAAAGCAAGTGACGAATCAGAAGCAGAAGAAGTTAAAGAAATGGTTAGATATTTGGAGATAACCCTTCGGTGTGTGGAAGAGTTTCCTTCCAAAAGGCCTAACATGTTGCAGGTGGTGGCATTGCTGCGAGAGTTGATGCCTGGATCAACCAATGGAAGCAGCAACAGTGCTTGA 3408 42.78 MERNLSQLSLLPLTLAVVVILFALASSAEQEVVTSIKTDAAALLKFKDMIDKDPNGVLSSWKLENNPCSWYGVSCQSGRAIALDLSGCSLAGNVYFDPLSSLDMLMALNLSTNSFTINSTTLLQLPYNLQQLQLSLAKVVGSVPENLFSKCPNLVFVDLSLNNLTGYLPENLLLNANKLQDLDLSYNNLTGSISGLRIDENSCNSLLHVELSGNRIIGSIPDAISNCTNLQTLGLSENLLSGEIPRSLGELSSLQRLDLSHNQLNGWLPSDWRNACNSLQELKLCYNNISGVIPASFSACSWLQILDLSNNNISGPLPDSIFKNLVSLQSLLLSNNIISGPLPSSISHCKKLQLVDLSSNRISGLISPDICPGAESLQELKMPDNLIIGGIPPELSLCPQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKIPPELGKCKSLKDLILNNNRLSGEIPTELFSCSNLEWVSLTSNELTGEIPKEFGLLSRLAVLQLGNNSLSGQIPAELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILSGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGRIPEEFGDMVALQVLELSHNQLSGEIPASFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPATSSNVDAGKGSTKPEAGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKMQDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVSDGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLRCVEEFPSKRPNMLQVVALLRELMPGSTNGSSNSA 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40251030 40254437 + Lag0029582.1 Lac8g2195 618029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2195 1135 CDD STKc_IRAK 844 1123 - -
Lac8g2195 1135 FunFam serine/threonine-protein kinase BRI1-like 2 914 1131 - -
Lac8g2195 1135 FunFam serine/threonine-protein kinase BRI1-like 2 799 913 - -
Lac8g2195 1135 MobiDBLite consensus disorder prediction 724 746 - -
Lac8g2195 1135 FunFam serine/threonine-protein kinase BRI1-like 2 38 149 - -
Lac8g2195 1135 PRINTS Leucine-rich repeat signature 179 192 - -
Lac8g2195 1135 PRINTS Leucine-rich repeat signature 251 264 - -
Lac8g2195 1135 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 SUPERFAMILY Protein kinase-like (PK-like) 819 1120 IPR011009 -
Lac8g2195 1135 ProSiteProfiles Protein kinase domain profile. 838 1124 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2195 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 371 560 - -
Lac8g2195 1135 SUPERFAMILY RNI-like 487 702 - -
Lac8g2195 1135 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
Lac8g2195 1135 SMART LRR_typ_2 303 324 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 251 274 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 447 470 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 422 446 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 494 518 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 634 658 IPR003591 -
Lac8g2195 1135 SMART LRR_typ_2 325 349 IPR003591 -
Lac8g2195 1135 Gene3D Phosphorylase Kinase; domain 1 799 913 - -
Lac8g2195 1135 MobiDBLite consensus disorder prediction 729 743 - -
Lac8g2195 1135 SMART serkin_6 838 1124 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2195 1135 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Lac8g2195 1135 Pfam Leucine rich repeat 606 647 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine rich repeat 208 264 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine rich repeat 278 336 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Gene3D Ribonuclease Inhibitor 176 727 IPR032675 -
Lac8g2195 1135 Gene3D - 552 608 - -
Lac8g2195 1135 SUPERFAMILY RNI-like 211 539 - -
Lac8g2195 1135 Pfam Leucine Rich Repeat 178 194 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine Rich Repeat 660 682 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 Pfam Leucine Rich Repeat 448 470 IPR001611 GO:0005515(InterPro)
Lac8g2195 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2195 1135 Gene3D Transferase(Phosphotransferase) domain 1 914 1132 - -
Lac8g2195 1135 SUPERFAMILY L domain-like 63 272 - -
Lac8g2195 1135 ProSitePatterns Protein kinases ATP-binding region signature. 844 867 IPR017441 GO:0005524(InterPro)
Lac8g2195 1135 Pfam Brassinosteroid receptor island domain 549 607 IPR045381 -
Lac8g2195 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 194 370 - -
Lac8g2195 1135 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 275 1121 - -
Lac8g2195 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 605 727 - -
Lac8g2195 1135 Pfam Protein kinase domain 840 1117 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2914 Lac-Chr5:47292775 Lac8g2195 Lac-Chr8:40251030 4.20E-91 dispersed
Lac6g0268 Lac-Chr6:2156566 Lac8g2195 Lac-Chr8:40251030 1.00E-47 dispersed
Lac8g2195 Lac-Chr8:40251030 Lac12g0877 Lac-Chr12:9089906 2.50E-63 dispersed
Lac8g2195 Lac-Chr8:40251030 Lac1g2432 Lac-Chr1:45792759 5.40E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86381 PF00069 Pkinase 1.20E-43 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2195 - - - 0.0