Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2196 ATGTTGAAAGCTTCTTCTTCTTCTTCTGCAGCAGCAGCAGCAGCTGCTACAGCTTCTTCTTCTGGTGGCCCTCCTCCCAATTCTGACCATGGGGTCACCAGCAAAAGAAAAAGAAGGCCTGCAGGAACCCCAGATCCGGATGCGGAAGTGGTTTCCCTATCGCCAAAAACGCTTTTGGAATCGGATCGCTATGTTTGTGAGATATGCAACCAAGGGTTCCAGAGGGATCAGAATCTGCAGATGCACCGCCGCCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGGCGGAGACGGCGGAGGCGGTGAAGAAAAAGGTGTTTGTTTGCCCCGAGCCGACTTGTCTCCACCACGACCCTTGCCATGCCCTTGGTGACCTCGTCGGCATCAAGAAGCACTTCCGGAGAAAGCACAGCAACCAGAAGCACTGGGTTTGTGACAAGTGCTCCAAGGCTTACGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCACCAAGACGCTTGCAATCTCCGGCAGATGAGATCCGATCAGTTACAGGCTGCGCCGCCGCTGCTGCCGCCGCCATTACTGCAGCCCTACTCACGATCGGTTTCTTACACCGACGCCTCCACCAGCAACGATCATGGCTTTCAAATGGCTACTCCACTACGAGGGTTTCCAATTTTATCATCAAGTTCAGATCGAAACATCAACATTAATCTACCCGATCACCATGATCTCGAGCTCCATCTTTCTTCTCCAAGCTCGGCATTTCTGAAGCTCTCAATTGGGTCCAACAAGGAAGCGAACGACGAGCGTCAGCTCGAGCTGGCGATAGCCGAGAAGGCATACGCAGACGAAGCGAGACGAGAGGCGAAACGACAGATCGAAATCGCCGAGGTCGAGTTTGCAAACGCCAAGATGATACGGCAGCAGGCTCAGGCGGAATTGGAGAAGGCAAGGATCTTGAAAGAAGAGGCCAGCCGGAAAATGAGCTCCACCATCATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTCCACACAAGCTCCGTCGCGCCCGAGGAGACGTCGCTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGATGGAGAGTGA 1173 53.45 MLKASSSSSAAAAAAATASSSGGPPPNSDHGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAEAVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKHWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQMRSDQLQAAPPLLPPPLLQPYSRSVSYTDASTSNDHGFQMATPLRGFPILSSSSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEANDERQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHTSSVAPEETSLAISYMSSATTEGDGE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40265888 40267783 - Lag0029583.1 Lac8g2196 618030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2196 390 SMART c2h2final6 64 86 IPR013087 -
Lac8g2196 390 SMART c2h2final6 107 137 IPR013087 -
Lac8g2196 390 SMART c2h2final6 143 170 IPR013087 -
Lac8g2196 390 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 103 137 - -
Lac8g2196 390 Gene3D Classic Zinc Finger 42 110 - -
Lac8g2196 390 SUPERFAMILY beta-beta-alpha zinc fingers 63 163 IPR036236 -
Lac8g2196 390 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 166 - -
Lac8g2196 390 FunFam protein indeterminate-domain 12-like 43 113 - -
Lac8g2196 390 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lac8g2196 390 Gene3D Classic Zinc Finger 128 204 - -
Lac8g2196 390 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 344 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac8g2196 390 MobiDBLite consensus disorder prediction 1 52 - -
Lac8g2196 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lac8g2196 390 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 192 - -
Lac8g2196 390 MobiDBLite consensus disorder prediction 1 28 - -
Lac8g2196 390 Coils Coil 305 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0312 Lac-Chr10:2411785 Lac8g2196 Lac-Chr8:40265888 2.00E-92 dispersed
Lac8g2196 Lac-Chr8:40265888 Lac9g2004 Lac-Chr9:39675566 4.50E-57 dispersed
Lac8g2196 Lac-Chr8:40265888 Lac10g3025 Lac-Chr10:44810321 3.70E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24316 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2196 K25871 - csv:101210468 659.062