Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2211 ATGGGTGTGAAAATGCAGCAAAGCTACAACTCTGTTGCTAAGTTGAATGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTCAAGCTAACAGGGCTTGGCTTCGAAAGTATCTTCTGCTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAACAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTCAACCATGTTCATGCCTTAGCTGTGCTTGTTTCCACCTTTCATTACTTCAAGAGCCCTTCTGCAATTGATCAGGAAACTTTTGCAGAATACACAGCAAGAACTGCTTTCGAACGGCCTCTACTTAGTGGGGTGGCATATGCACAGAGAGTGGTTCATTCGGAGAGGGATATATTCGAAAAGCAACATGGATGGATGATAAAGACAATGGAAAGAGAACCTTCGCCCATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCTTATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGCGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTCTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTGGGAGTTGTTTTGACGTTCCCCGTTTACAAGTCCAAATTGCCTCCTTTACCAACAGAAGAAGAACGTATACAAGCAACAGCAGGCTACGTTGGTGGAGCTTTTGATGTCGAGTCACTTGTGGAGAACTTGCTTGGCCAGCTTGCAGGGAATCAGGCCATTTTGGTAAATGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTACGGTCATCAATATCAAGATGGTGATTCATCTCTTTTGCATGAGAGCAGCCTCGATTTTGGAGATCCATTTAGAAAGCATCTGATGATTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCCCTGACTACTGCATTCTTATTCTTCGTGATCGGGCTGTTAGTTGGATATATTTTGTACGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTCCATGAAATGCAAGAACTGAAAGTTAGAGCAGAGGCCGCTGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCTCATGAAATTAGAACACCAATGAATGGCATCCTCGGAATGCTTGCTCTGCTTCTAGATACAGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAACGAGGTTCTTGACCGTGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCATTCGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTCGTTTCTGACAAAGTTCCAGAAATTGTAATCGGAGATCCAGGAAGATTCAGACAAATCATAACAAATCTTGTGGGTAACTCTGTGAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACATCTAGCTGGGCACTCAAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTAACTTGTTTATATCTGACGGTCGTGAATGTCAAACTTTAAGTGGACGTGAAGCAGCTGATAATCAGAACAGTTGGGATAACTTTAAACATCTAATTGCTGACGAGACCTTTCAATCGAATGCCGCTCCAAACAACCCGGCAGTTGACAATGAGTGTTGTGGTCATGTTACTTTAATGGTAAGTGTGGAGGACACTGGAATTGGAATCCTTTTACATGCCCAAAATCGAGTCTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGAAACTATGGAGGAACTGGTATCGGCTTGAGTATCAGCAAATGTTTGGTTGAACTAATGGGTGGTCAGATCAACTTCATCAGCCGACCTCAGATTGGTAGCACGTTTTCATTCACTGCTGTTTTAGGAAAATGTAAGAAGAATTCAATCAATGACATGAAAAAACCCAATTCTGAAGAACTTCCCCCCAGTTTCAGAGGAATGAAAGCAATCATAGTTGACAGGAAACCAGTTAGAGCTTCTGTTACCAGATATCATTTGAAGAGACTTGGTATGGTTGTTGAAGTCACCAGTAGCATCAAAGTAGCAGCAGCTTCTTTATGCAGAGAAAATGGCTCCACAGTACCAGGCTGGAAACTGAACGGGAGTTCGTTTAAGCTACCGAAACTGATCCTTCTCGCTACAAATATTACCGCTGCAGAACTAGACAAGGCAAGGGCAGCAGGTTTTGCAGACACCGTGATCATGAAACCGTTGAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTTGGGGTTAAGAATCAGAGACGTGGAAGGGGCCTACCGAATGGTTCGGCTTTCCTCCAAAGCCTTCTTTGTGGCAAGAGAATCTTAATTGTCGACGACAATAGAGTTAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTCGAGGCGACTCGTCTTATCAGGCAGATGGAGAGCAAGGCAAACGAAGGAGGATCATCTGCAGCCGAAGGCGCATGGCATGTACCGATATTAGCAATGACTGCAGACGTGATTCATGCAACGTATGACGAATGCCTGAAATCCGGAATGGATGGCTACGTCTCGAAACCCTTTGAGGAAGAAAATCTATACAAGGAAGTTGCCAAGTTTTTCAAAAAATCATAG 2886 43.76 MGVKMQQSYNSVAKLNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKSPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSERDIFEKQHGWMIKTMEREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPLPTEEERIQATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDSSLLHESSLDFGDPFRKHLMICRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAGHSKGSIDSKYVNGISDSNLFISDGRECQTLSGREAADNQNSWDNFKHLIADETFQSNAAPNNPAVDNECCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPNSEELPPSFRGMKAIIVDRKPVRASVTRYHLKRLGMVVEVTSSIKVAAASLCRENGSTVPGWKLNGSSFKLPKLILLATNITAAELDKARAAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRQMESKANEGGSSAAEGAWHVPILAMTADVIHATYDECLKSGMDGYVSKPFEEENLYKEVAKFFKKS 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40434116 40440693 + Lag0029598.1 Lac8g2211 618045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2211 961 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 958 IPR050956 -
Lac8g2211 961 Pfam CHASE domain 110 290 IPR006189 -
Lac8g2211 961 Pfam His Kinase A (phospho-acceptor) domain 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac8g2211 961 Gene3D - 353 443 - -
Lac8g2211 961 ProSiteProfiles CHASE domain profile. 107 319 IPR006189 -
Lac8g2211 961 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 598 670 IPR003594 -
Lac8g2211 961 SMART HisKA_10 380 445 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac8g2211 961 SMART CHASE_2 107 292 IPR006189 -
Lac8g2211 961 CDD REC_hyHK_CKI1_RcsC-like 830 954 - -
Lac8g2211 961 Gene3D - 444 678 IPR036890 -
Lac8g2211 961 PRINTS Bacterial sensor protein C-terminal signature 600 614 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac8g2211 961 PRINTS Bacterial sensor protein C-terminal signature 618 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac8g2211 961 PRINTS Bacterial sensor protein C-terminal signature 635 653 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac8g2211 961 PRINTS Bacterial sensor protein C-terminal signature 659 672 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac8g2211 961 SMART REC_2 828 954 IPR001789 GO:0000160(InterPro)
Lac8g2211 961 FunFam Histidine kinase 4 352 443 - -
Lac8g2211 961 Gene3D - 823 961 - -
Lac8g2211 961 CDD HisKA 380 441 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac8g2211 961 ProSiteProfiles Histidine kinase domain profile. 387 675 IPR005467 -
Lac8g2211 961 SMART HKATPase_4 492 675 IPR003594 -
Lac8g2211 961 FunFam Histidine kinase 4 111 326 - -
Lac8g2211 961 ProSiteProfiles Response regulatory domain profile. 829 958 IPR001789 GO:0000160(InterPro)
Lac8g2211 961 SUPERFAMILY CheY-like 695 805 IPR011006 -
Lac8g2211 961 SUPERFAMILY CheY-like 827 957 IPR011006 -
Lac8g2211 961 CDD HATPase_EvgS-ArcB-TorS-like 497 673 - -
Lac8g2211 961 Coils Coil 430 450 - -
Lac8g2211 961 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 434 670 IPR036890 -
Lac8g2211 961 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 366 446 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac8g2211 961 Gene3D - 58 110 - -
Lac8g2211 961 Gene3D CHASE domain 111 326 IPR042240 -
Lac8g2211 961 Pfam Response regulator receiver domain 830 954 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g1678 Lac-Chr13:18562023 Lac8g2211 Lac-Chr8:40434116 0.00E+00 dispersed
Lac2g0516 Lac-Chr2:3814689 Lac8g2211 Lac-Chr8:40434116 4.30E-46 dispersed
Lac6g1882 Lac-Chr6:31898734 Lac8g2211 Lac-Chr8:40434116 1.70E-11 dispersed
Lac8g2211 Lac-Chr8:40434116 Lac9g1967 Lac-Chr9:39417920 5.20E-272 dispersed
Lac8g2211 Lac-Chr8:40434116 Lac12g0372 Lac-Chr12:4297308 2.90E-275 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24320 PF02518 HATPase_c 1.90E-31 CL0025 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2211 K14489 - csv:101209777 1724.14