Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2225 ATGGCGATGGCGGCTACAGTTCCGACACCGGTGACTGCCGCACCAGTTCAAACTGCGGCGATTCCTCCTCCCGCGGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCGTCATTGTATGTGGGCGATCTGGACCAGACTGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCACTCATCAGGATGCTTCCAACGCTATGGAACACTTGAATTTCACTCCTATCAATGGGAAGCCTATCAGGATTATGATGTCTAATCGAGATCCTAGCAGTCGAAAAAGTGGTTATGCAAATGTTTTTATCAAAAATCTGGACACGTCAATTGATAACAAGGCATTACATGATACATTTGCAACCTTTGGTTCTGTTCTTTCTTGCAAAGTTGCCGTTGATGTCAATGGGCAATCCAAAGGCTATGGGTTTGTGCAATTTGAAAATGAGGAAGCTGCAGAAAGTGCAATAATAAGGTTGAATGGTATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAGGAAAGGATTCGAGCTAATGGATCATTGTTTACAAATGTTTATGTGAAAAATTTACCGGAAACTACCACGGATGATGATCTAAAAAATCTTTTTGCCACACATGGTGCCATTACAAGTGCAGTTGTCATGAGGGATTCAAATGGGAAGTCCAGATGTTTTGGTTTTGTGAACTTCCAAAACACTGACTCTGCTGCTGCTGCAGTTGATAAGTTGAATGGCACCATCCTTGGTGATGACAGGGTTTTGTATGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGCAGATTTGAAAAATTACAAGGTGCTAATTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTAGCCTTTACTTCACCGGATGAAGCAACAAGAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAAGAAACCTCTGTATGTGGCTGTTGCCCAGCGCAAAGAAGAGAGAAAGGCTCGGTTGCAGGCACAATTTGCTCAAATCCGAGCAGCTGGTGGAATATCATCTTTGCCTTCAGGAATTCCAGGATTTCATCCAGGGGCTCCACGACTTGCACCTCAGCAGCTGTATTATGGTCAGGGAAACCCCGGGCTGGTGCCCCCACAGCCTGCTGGATACGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTTCATCATGCCTTACCAATTTCAGAGGCAAGGACAGCCTGGCCCACGCTCGGGGATGAGGCGGGGTGGGAATTCACAACCAGTTCAGCAGCAGCAGTTACTGCTCCGTGGCTCTGGACAAGGATTTAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCCGTCCTGCCCCAAGGTCTTGTAGGTCCGATGATGCCTCTGGCTTTTGATAGTTCTGGAGTGTCTAGCTCCCCCATTGACATCCAGCGATCAAGGACCGTGCCTTCTTCAACACTCGCTTCTGCATTAGCTTCCGCTACACCTGAAAATCAGCGCGTGATGCTTGGCGAGCAGCTGTATCCACTTGTGGAACGTCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCGGAGGTGCTTCATCTCATCGAGTCACCGGATGACTTGAAGAGTAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCCGAGCTCTCTGATCAGCTTGGTGCATTGGCTCTTAACAAATGA 1965 47.18 MAMAATVPTPVTAAPVQTAAIPPPAGSVATGGGFLSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSTHQDASNAMEHLNFTPINGKPIRIMMSNRDPSSRKSGYANVFIKNLDTSIDNKALHDTFATFGSVLSCKVAVDVNGQSKGYGFVQFENEEAAESAIIRLNGMLLNDKQVYVGHFIRHQERIRANGSLFTNVYVKNLPETTTDDDLKNLFATHGAITSAVVMRDSNGKSRCFGFVNFQNTDSAAAAVDKLNGTILGDDRVLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFTSPDEATRALNEMNGKMKGKKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAPRLAPQQLYYGQGNPGLVPPQPAGYGFQPQLMTGMRPGMGPNFIMPYQFQRQGQPGPRSGMRRGGNSQPVQQQQLLLRGSGQGFRYMNNARNGLEPPVLPQGLVGPMMPLAFDSSGVSSSPIDIQRSRTVPSSTLASALASATPENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALNK 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40546497 40550150 - Lag0029612.1 Lac8g2225 618059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2225 654 MobiDBLite consensus disorder prediction 482 501 - -
Lac8g2225 654 Gene3D - 558 639 - -
Lac8g2225 654 FunFam Polyadenylate-binding protein 558 640 - -
Lac8g2225 654 FunFam Polyadenylate-binding protein 207 301 - -
Lac8g2225 654 Gene3D - 126 199 IPR012677 -
Lac8g2225 654 Gene3D - 35 125 IPR012677 -
Lac8g2225 654 Pfam RNA recognition motif 39 109 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 Pfam RNA recognition motif 321 389 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 Pfam RNA recognition motif 127 195 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 Pfam RNA recognition motif 217 284 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723(InterPro)
Lac8g2225 654 Gene3D - 316 416 IPR012677 -
Lac8g2225 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 Coils Coil 394 414 - -
Lac8g2225 654 PANTHER RNA BINDING PROTEIN 27 216 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Lac8g2225 654 SMART rrm2_1 38 111 IPR003954 GO:0003676(InterPro)
Lac8g2225 654 SMART rrm2_1 320 392 IPR003954 GO:0003676(InterPro)
Lac8g2225 654 SMART rrm2_1 216 288 IPR003954 GO:0003676(InterPro)
Lac8g2225 654 SMART rrm2_1 126 198 IPR003954 GO:0003676(InterPro)
Lac8g2225 654 PRINTS Paraneoplastic encephalomyelitis antigen family signature 215 230 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Lac8g2225 654 PRINTS Paraneoplastic encephalomyelitis antigen family signature 324 339 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Lac8g2225 654 PRINTS Paraneoplastic encephalomyelitis antigen family signature 306 323 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Lac8g2225 654 PRINTS Paraneoplastic encephalomyelitis antigen family signature 339 351 IPR002343 GO:0003723(InterPro)|GO:1990904(InterPro)
Lac8g2225 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 SUPERFAMILY PABC (PABP) domain 470 641 IPR036053 GO:0003723(InterPro)
Lac8g2225 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 635 IPR006515 GO:0003723(InterPro)
Lac8g2225 654 SUPERFAMILY RNA-binding domain, RBD 215 400 IPR035979 GO:0003676(InterPro)
Lac8g2225 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 CDD RRM2_I_PABPs 123 199 IPR045305 -
Lac8g2225 654 SMART rrm1_1 216 289 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 SMART rrm1_1 320 392 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 SMART rrm1_1 38 111 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 SMART rrm1_1 126 198 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723(InterPro)
Lac8g2225 654 FunFam Polyadenylate-binding protein 120 206 - -
Lac8g2225 654 CDD RRM3_I_PABPs 214 294 - -
Lac8g2225 654 SMART poly_2 574 637 IPR002004 GO:0003723(InterPro)
Lac8g2225 654 CDD RRM4_I_PABPs 318 396 - -
Lac8g2225 654 Coils Coil 288 308 - -
Lac8g2225 654 Gene3D - 211 315 IPR012677 -
Lac8g2225 654 FunFam Polyadenylate-binding protein 15 119 - -
Lac8g2225 654 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723(InterPro)
Lac8g2225 654 FunFam Polyadenylate-binding protein 302 407 - -
Lac8g2225 654 SUPERFAMILY RNA-binding domain, RBD 37 202 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1658 Lac-Chr4:35272253 Lac8g2225 Lac-Chr8:40546497 1.10E-188 dispersed
Lac5g2560 Lac-Chr5:44151357 Lac8g2225 Lac-Chr8:40546497 2.40E-193 dispersed
Lac8g2225 Lac-Chr8:40546497 Lac9g1003 Lac-Chr9:23376975 2.60E-17 dispersed
Lac8g2222 Lac-Chr8:40535667 Lac8g2225 Lac-Chr8:40546497 2.60E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2225 K13126 - csv:101219081 1139.02