Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2246 ATGGAGAAGAGCTCTGTTTATTCCCTCCATTCCCGGTTGATCTTTCTCCTCATTTTGAGTCTCTTTGTTCCAATTAGTCTGTCTCTTCCGACCGAGACTCGAGCATTGCTTCTTTTCAAAGAGAATCTCAAAGACCCTACAGGTTTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCCGGGGTTACCTGCGATCGGTTTTCCGGGAAAGTCGTAGAGATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAGAGTCTCACAACACTTTCCTTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAACTGATCAACTGTAGCAATCTTAGAGTATTGAATCTCACTGGCAATGAAATGGTTAGGAGGATTCCTGATCTTTCTCAGCTGAGAAAATTGGAGGTTCTAGATCTATCAATCAACTTCTTTTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGACTGGTGAAATACCAGAATCTATTGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACATTTGAGTGGGGAAATTCCAGAGTCTCTCTTCGAATTGAAGGCATTAGAGACATTGGATCTATCAAGGAACAAGATTTCTGGTAAACTCTCCAAGTCGATATCCAAGTTGCAGAATCTGAATAAGCTTGAGCTTTTTGTTAACCATTTGACTGGAGAAATCCCACCAGAGATTTCAAACCTAACCCTTCTGCAAGAAATCGATATTTCGGCGAATAGTTTGAGTGGGGAGTTGCCTGAAGGGGTCGGGAACCTGAGGAATTTGGTGGTTTTTCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGTTTTGGAAATTTGCAGAATCTTATTGCATTTTCAATCTATAGGAACAACTTTTCTGGGGAATTTCCAGTGAACTTCGGCAGATTCGCTCCGCTCAACAGCATCGACATATCTGAAAACCAATTTTCTGGGAATTTCCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTCTAGCTGAGTGCAAATCACTGCAAAGGTTCAGAATCAATAATAATCAAATGTCTGGCATGATTCCAGATGGAGTATGGGCTCTACCTAATGCAAAAATGATTGATTTTAGTGACAATGAATTCACTGGAGTTATATCCCCAGACATTGGTCTATCTACCAGCTTGAGCCAATTGGTTTTGCTAAACAATAAGTTCTCAGGGAAGCTTCCATCAGAGCTTGGCAAGTTGACAAATTTGGAGAGGCTTCACTTGAGTAATAATGACTTCAATGGAGAAATACCTTCTGAAATTGGTTTTCTCAGGCAACTTTCATCATTACATCTGGAAGTAAATTCTTTGAATGGATCAATCCCACAACAGATTGGTGATTGTGAAAGACTTGTGGACATAAATTTTGCTCACAACTCTCTTAGTGGTAGCATTCCATCTTCATTTTCATTAATCAGCTCTTTGAACTCACTGAACCTCTCAAGCAACAAACTTACAGGTATGATCCCAGAATACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGAAATCAGCTGTTCGGACGAGTTCCTTCCAGTCTTCTGGCAATGAGTGGGGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGATTACTTGTACTGGACAGCATAGTCAGAAGGGGGTGCTTGAGGATAAACTTGTATTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGTTAGTGTTGGTAAGTTGTAACTACTTGAAGCTCAGTGGGACTGGCTCAGAGAACAGCCAGGAAGGGGACCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATTTGCAGCTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGACCTGAAGAAAAACGGCGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAATATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACTAATGGCAACCTGTGTGAAGCACTCCAAAGACAGATCAAAGGTGCGCAGCCTGAATTGAACTGGAATCAAAGGTACAGAATTGCCTTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTGTTCGCCACCTATAATTCATAGAGATATAAAGTCAACAAACATACTTCTAGATGGAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGTTTCTGAGAACAGCTCTCTTGCTGGCACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAGAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCGATAGAAGATGAATATGGAGAAGGAAAAGACATTGTCTACTGGGTCTCAACACACCTCGATGACCGCAACAATGTCCTCAAGCTTCTAGACATCAAAGTTGCATCTGAAGTCGTCCAAAATGACATGATTAAAGTCCTGAAGATAGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATTAGACGCCGATCCTTACTCTTCTTCAATGTCCCTGAACAACAGTTCAAATAAAAACATGAAGGATTTTGTTTAG 2934 40.93 MEKSSVYSLHSRLIFLLILSLFVPISLSLPTETRALLLFKENLKDPTGFLHSWIDSESPCGFSGVTCDRFSGKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLINCSNLRVLNLTGNEMVRRIPDLSQLRKLEVLDLSINFFSGQFPIWVGNLTGLVSLGLGENEFETGEIPESIGNLKNLTWLYLANAHLSGEIPESLFELKALETLDLSRNKISGKLSKSISKLQNLNKLELFVNHLTGEIPPEISNLTLLQEIDISANSLSGELPEGVGNLRNLVVFQSYENNFSGKLPEGFGNLQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLAECKSLQRFRINNNQMSGMIPDGVWALPNAKMIDFSDNEFTGVISPDIGLSTSLSQLVLLNNKFSGKLPSELGKLTNLERLHLSNNDFNGEIPSEIGFLRQLSSLHLEVNSLNGSIPQQIGDCERLVDINFAHNSLSGSIPSSFSLISSLNSLNLSSNKLTGMIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLITCTGQHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCNYLKLSGTGSENSQEGDQQGAPKWKIASFHQVEIDADEICSFEEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGAQPELNWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVADQFQSVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWVSTHLDDRNNVLKLLDIKVASEVVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMSLNNSSNKNMKDFV 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40746527 40749781 + Lag0029633.1 Lac8g2246 618080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2246 977 ProSiteProfiles Protein kinase domain profile. 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2246 977 FunFam Receptor-like protein kinase HSL1 293 595 - -
Lac8g2246 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 756 971 - -
Lac8g2246 977 FunFam Probable inactive receptor kinase RLK902 29 183 - -
Lac8g2246 977 Gene3D Ribonuclease Inhibitor 319 595 IPR032675 -
Lac8g2246 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2246 977 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Lac8g2246 977 FunFam Leucine-rich receptor-like protein kinase family protein 671 755 - -
Lac8g2246 977 SUPERFAMILY L domain-like 56 301 - -
Lac8g2246 977 SUPERFAMILY Protein kinase-like (PK-like) 678 953 IPR011009 -
Lac8g2246 977 Gene3D Ribonuclease Inhibitor 241 313 IPR032675 -
Lac8g2246 977 Gene3D Ribonuclease Inhibitor 184 240 IPR032675 -
Lac8g2246 977 SUPERFAMILY RNI-like 256 570 - -
Lac8g2246 977 Gene3D Transferase(Phosphotransferase) domain 1 756 974 - -
Lac8g2246 977 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Lac8g2246 977 FunFam Leucine-rich repeat receptor protein kinase EMS1 208 292 - -
Lac8g2246 977 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 333 955 IPR051564 GO:0016020(PANTHER)
Lac8g2246 977 Gene3D Ribonuclease Inhibitor 30 183 IPR032675 -
Lac8g2246 977 PRINTS Leucine-rich repeat signature 527 540 - -
Lac8g2246 977 PRINTS Leucine-rich repeat signature 218 231 - -
Lac8g2246 977 Pfam Leucine Rich Repeat 97 119 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine Rich Repeat 193 214 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine Rich Repeat 266 287 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 Pfam Leucine Rich Repeat 457 479 IPR001611 GO:0005515(InterPro)
Lac8g2246 977 SMART serkin_6 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2246 977 SMART LRR_typ_2 263 287 IPR003591 -
Lac8g2246 977 SMART LRR_typ_2 527 551 IPR003591 -
Lac8g2246 977 SMART LRR_typ_2 479 503 IPR003591 -
Lac8g2246 977 SMART LRR_typ_2 95 119 IPR003591 -
Lac8g2246 977 SMART LRR_typ_2 191 215 IPR003591 -
Lac8g2246 977 SMART LRR_typ_2 455 477 IPR003591 -
Lac8g2246 977 Gene3D Phosphorylase Kinase; domain 1 651 755 - -
Lac8g2246 977 Pfam Protein kinase domain 682 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g1064 Lac-Chr6:9754287 Lac8g2246 Lac-Chr8:40746527 7.70E-69 dispersed
Lac8g2219 Lac-Chr8:40524688 Lac8g2246 Lac-Chr8:40746527 4.70E-64 dispersed
Lac8g2246 Lac-Chr8:40746527 Lac10g0377 Lac-Chr10:2941527 1.90E-51 dispersed
Lac8g2246 Lac-Chr8:40746527 Lac6g1049 Lac-Chr6:9609861 7.50E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86387 PF00069 Pkinase 1.30E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2246 - - - 0.0