Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2252 ATGATGAACACCATGGGAGTCTTTGAAGATATTGGCTTTTGCCGAAATCTCGAGTATTTTTCGGCTCCTCTTGGGGAACAAGAGACAGCTCGGGAGCATGAAGCTGAGGCTACTCTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTATCGGCGACTTAAAGAACAAAGCAAAGAGAAGGAAGGGGCTGATAATTCTAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCCTGAAATATATGTTGAAGATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAGCCTGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCAATTGCTAAATATCAGGCTGATCATGCAATTCCTGGGAAGAACGATGACTGCAATACAGTAACATCGACTCCTCACACTTTACAAGAGCTCCAAGATACGACCCTTGGATCACTTTTGTCCGCTCTGATGCAACATTGTGATCCACCCCAGAGACGTTTTCCACTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCAACTGGAAGCGAAGAATGGTGGCCTGAATTGGGGCTACCCAAGGAACAGGGGCCTCCCCCTTATAAGAAGCCCCACGATCTGAAGAAGGCTTGGAAAGTTAGCGTTCTCACGGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTTGGCCAGGAAATTGTATCCTGATAAATGCCCGCCTGTGTCAATTTGTGGGACCGGATCTCTTTTAATAAGTGACACGAGCGATTACGATGTTGAAGGAGTAGAAGATGAACACAATGTCGAAACAGAGGAAAGCAAGCCTCATGATCTTAATTTCTTTAACATGGGGGCTCCTGGACCTAGAGAGAGGCTTATGATCCCTCCAGTAGTGGGACATCAGATTAAGGAAGAACTCATGGAGAACAATTCAGACTTCATTCAAAAGAGGAAGCAGCTGGCTGATGAGTCGAATACAATGATGAATCAGAAGATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCCGCGCCTCGGGTTTCTCGACAGGACTTCGAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCACATATTTGGCATGCCGAGCTTTCAAACTAACGATGACAAATCATCCCCAGTTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCCGATGAACCCGACTCCACCCTTCCGGGTTTCAGGACTTGGACTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCATCAACCGGACAAAAATGTGAATTCCGGGAACGTCGAAGCAAGGGACGATCACAATCAACAGCTGCCCAAATTCCAACTCCAAGTCGAGGATAACTTGTATTGCCAAGGAGCAATGGTGGGAAATAGCATGCCAATGCAGCACCCTGATTTCTCTTCCACAAAAGTCCCATTCGACGAATACAAGGCATTCGATTCTCCCTTCGCCATGTATCCCAACGACAGCATTCCCGACTTCAGATTCGGTTCTCCATTCAACTTGGCATCAATCGACTATCCAGTAGACCCACCATTGCCGAAGCAAGATACGCAGTTGTGGTACCTTTGA 1836 47.0 MMNTMGVFEDIGFCRNLEYFSAPLGEQETAREHEAEATLEEDYSDEELDVDELERRMWRDRMLYRRLKEQSKEKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGSEEWWPELGLPKEQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGTGSLLISDTSDYDVEGVEDEHNVETEESKPHDLNFFNMGAPGPRERLMIPPVVGHQIKEELMENNSDFIQKRKQLADESNTMMNQKIYTCEYSQCPYNSPRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQTNDDKSSPVPPSFNHPKPPTRPMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNHQPDKNVNSGNVEARDDHNQQLPKFQLQVEDNLYCQGAMVGNSMPMQHPDFSSTKVPFDEYKAFDSPFAMYPNDSIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40785075 40786910 - Lag0029639.1 Lac8g2252 618086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2252 611 MobiDBLite consensus disorder prediction 443 475 - -
Lac8g2252 611 MobiDBLite consensus disorder prediction 443 458 - -
Lac8g2252 611 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac8g2252 611 MobiDBLite consensus disorder prediction 69 94 - -
Lac8g2252 611 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac8g2252 611 Coils Coil 67 87 - -
Lac8g2252 611 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 8 606 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac8g2252 611 FunFam Ethylene insensitive 3-like 1 83 161 - -
Lac8g2252 611 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Lac8g2252 611 FunFam Ethylene insensitive 3-like 1 171 308 - -
Lac8g2252 611 Coils Coil 36 56 - -
Lac8g2252 611 Coils Coil 374 394 - -
Lac8g2252 611 MobiDBLite consensus disorder prediction 460 475 - -
Lac8g2252 611 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2252 K14514 - - csv:101214396 1091.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1247 Lac-Chr3:10636244 Lac8g2252 Lac-Chr8:40785075 6.40E-207 dispersed
Lac3g1329 Lac-Chr3:11719073 Lac8g2252 Lac-Chr8:40785075 5.00E-94 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1247 . 2 624 EIL Transcription Factor Family AT2G27050 59.8 2.4e-195 679.5
Lac8g2252 . 8 525 EIL Transcription Factor Family AT2G27050 60.3 5.0e-169 592.0
Lac3g1329 . 66 325 EIL Transcription Factor Family AT2G27050 64.3 4.9e-92 336.3
Lac3g1329 . 70 326 EIL Transcription Factor Family AT5G21120 50.8 1.3e-72 271.6
Lac3g1329 . 58 576 EIL Transcription Factor Family AT1G73730 56.3 1.2e-143 507.7
Lac3g1247 . 38 334 EIL Transcription Factor Family AT1G73730 62.6 3.1e-104 376.7
Lac8g2252 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.3e-102 371.3
Lac3g1247 . 3 624 EIL Transcription Factor Family AT3G20770 62.7 3.5e-213 738.8
Lac8g2252 . 7 505 EIL Transcription Factor Family AT3G20770 63.4 4.0e-172 602.4
Lac3g1329 . 66 292 EIL Transcription Factor Family AT3G20770 72.1 9.7e-94 342.0
Lac3g1329 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 3.9e-70 263.5
Lac3g1329 . 77 290 EIL Transcription Factor Family AT5G10120 58.0 1.3e-71 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24323 PF04873 EIN3 2.90E-131 No_clan Lac TF