Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2252 ATGATGAACACCATGGGAGTCTTTGAAGATATTGGCTTTTGCCGAAATCTCGAGTATTTTTCGGCTCCTCTTGGGGAACAAGAGACAGCTCGGGAGCATGAAGCTGAGGCTACTCTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTATCGGCGACTTAAAGAACAAAGCAAAGAGAAGGAAGGGGCTGATAATTCTAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCCTGAAATATATGTTGAAGATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAAGGAAAGCCTGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCAATTGCTAAATATCAGGCTGATCATGCAATTCCTGGGAAGAACGATGACTGCAATACAGTAACATCGACTCCTCACACTTTACAAGAGCTCCAAGATACGACCCTTGGATCACTTTTGTCCGCTCTGATGCAACATTGTGATCCACCCCAGAGACGTTTTCCACTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCAACTGGAAGCGAAGAATGGTGGCCTGAATTGGGGCTACCCAAGGAACAGGGGCCTCCCCCTTATAAGAAGCCCCACGATCTGAAGAAGGCTTGGAAAGTTAGCGTTCTCACGGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCCTTGGCCAGGAAATTGTATCCTGATAAATGCCCGCCTGTGTCAATTTGTGGGACCGGATCTCTTTTAATAAGTGACACGAGCGATTACGATGTTGAAGGAGTAGAAGATGAACACAATGTCGAAACAGAGGAAAGCAAGCCTCATGATCTTAATTTCTTTAACATGGGGGCTCCTGGACCTAGAGAGAGGCTTATGATCCCTCCAGTAGTGGGACATCAGATTAAGGAAGAACTCATGGAGAACAATTCAGACTTCATTCAAAAGAGGAAGCAGCTGGCTGATGAGTCGAATACAATGATGAATCAGAAGATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCCGCGCCTCGGGTTTCTCGACAGGACTTCGAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCACATATTTGGCATGCCGAGCTTTCAAACTAACGATGACAAATCATCCCCAGTTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCCGATGAACCCGACTCCACCCTTCCGGGTTTCAGGACTTGGACTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCATCAACCGGACAAAAATGTGAATTCCGGGAACGTCGAAGCAAGGGACGATCACAATCAACAGCTGCCCAAATTCCAACTCCAAGTCGAGGATAACTTGTATTGCCAAGGAGCAATGGTGGGAAATAGCATGCCAATGCAGCACCCTGATTTCTCTTCCACAAAAGTCCCATTCGACGAATACAAGGCATTCGATTCTCCCTTCGCCATGTATCCCAACGACAGCATTCCCGACTTCAGATTCGGTTCTCCATTCAACTTGGCATCAATCGACTATCCAGTAGACCCACCATTGCCGAAGCAAGATACGCAGTTGTGGTACCTTTGA 1836 47.0 MMNTMGVFEDIGFCRNLEYFSAPLGEQETAREHEAEATLEEDYSDEELDVDELERRMWRDRMLYRRLKEQSKEKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGSEEWWPELGLPKEQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGTGSLLISDTSDYDVEGVEDEHNVETEESKPHDLNFFNMGAPGPRERLMIPPVVGHQIKEELMENNSDFIQKRKQLADESNTMMNQKIYTCEYSQCPYNSPRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQTNDDKSSPVPPSFNHPKPPTRPMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNHQPDKNVNSGNVEARDDHNQQLPKFQLQVEDNLYCQGAMVGNSMPMQHPDFSSTKVPFDEYKAFDSPFAMYPNDSIPDFRFGSPFNLASIDYPVDPPLPKQDTQLWYL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40785075 40786910 - Lag0029639.1 Lac8g2252 618086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2252 611 MobiDBLite consensus disorder prediction 443 475 - -
Lac8g2252 611 MobiDBLite consensus disorder prediction 443 458 - -
Lac8g2252 611 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac8g2252 611 MobiDBLite consensus disorder prediction 69 94 - -
Lac8g2252 611 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Lac8g2252 611 Coils Coil 67 87 - -
Lac8g2252 611 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 8 606 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Lac8g2252 611 FunFam Ethylene insensitive 3-like 1 83 161 - -
Lac8g2252 611 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Lac8g2252 611 FunFam Ethylene insensitive 3-like 1 171 308 - -
Lac8g2252 611 Coils Coil 36 56 - -
Lac8g2252 611 Coils Coil 374 394 - -
Lac8g2252 611 MobiDBLite consensus disorder prediction 460 475 - -
Lac8g2252 611 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1247 Lac-Chr3:10636244 Lac8g2252 Lac-Chr8:40785075 6.40E-207 dispersed
Lac3g1329 Lac-Chr3:11719073 Lac8g2252 Lac-Chr8:40785075 5.00E-94 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24323 PF04873 EIN3 2.90E-131 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2252 K14514 - csv:101214396 1091.64