Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2256 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAACTCTCTATATAGTCTCACACTGGATGAGGTCCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAATTAGCATGAACCTCGATGAGCTTCTTAAAAATGTGTGGACTGCCGAGGCCAACACCGTTGGTAAGGACAATGAGGAAAATACCGTCTTGGCCAATCAAACATCCTTACAACGTCAGGCTAGTCTTTCTTTGAATGGTGCTCTGAGTAAAAAGACCGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAAACAGTGAGGAGAAGAAGTCTCGTGATCGGCAACCTACCTTGGGAGAGATGACACTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACGTCGTCAAATAAAAAAGGCTCTGGTCCTATTGTTGAAATTGATGCAAATATCTCACCCCAGTTTCCCCAACAAGGGCAGTGGATACAGTATCCCCAACCTCAATATCAGCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTAGGAGCTGGTGCTGTAATGGATGTTCCATATGTAGACAATCAGTTGGCATTGCCAACACCATTGATGGGAGCTTTATCTGACACACAGACTTCTGGGAGGAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCGAGAAAGCAGGCTTATACCAACGAACTGGAGAACAAAGTTTCACGTTTGGAAGAGGAAAACGAAAGGCTCAGGAAACGGAAGTTATCACAGCACGGTTGCATCATATTGAATAAAACCCGAAAGAATAATCTCCTGGCCTTTCCTCCTTTATCAGCTCTGAAAGGGAACCCCTGTCCTTGCATCAATAATAGTCGAGGGAATTTCAAGGAGTTTTCGTCATCCATAAATGTTGCCTTGATTTTTCAATGA 1050 45.33 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANTVGKDNEENTVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSRDRQPTLGEMTLEDFLVKAGVVAETSSNKKGSGPIVEIDANISPQFPQQGQWIQYPQPQYQQQAAMMGVYMSGQPIPQPLHVGAGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKLSQHGCIILNKTRKNNLLAFPPLSALKGNPCPCINNSRGNFKEFSSSINVALIFQ 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40820319 40821775 - Lag0029643.1 Lac8g2256 618090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2256 349 CDD bZIP_plant_BZIP46 250 292 - -
Lac8g2256 349 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 301 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Lac8g2256 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2256 349 MobiDBLite consensus disorder prediction 1 20 - -
Lac8g2256 349 Coils Coil 266 293 - -
Lac8g2256 349 Pfam bZIP transcription factor 250 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2256 349 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2256 349 SUPERFAMILY Leucine zipper domain 250 293 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2256 349 Gene3D - 248 299 - -
Lac8g2256 349 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 301 - -
Lac8g2256 349 SMART brlzneu 246 310 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0883 Lac-Chr2:6953054 Lac8g2256 Lac-Chr8:40820319 2.30E-13 dispersed
Lac3g1218 Lac-Chr3:10361447 Lac8g2256 Lac-Chr8:40820319 7.00E-55 dispersed
Lac4g1645 Lac-Chr4:35181774 Lac8g2256 Lac-Chr8:40820319 2.60E-31 dispersed
Lac5g0085 Lac-Chr5:717123 Lac8g2256 Lac-Chr8:40820319 5.70E-11 dispersed
Lac8g1675 Lac-Chr8:34869877 Lac8g2256 Lac-Chr8:40820319 9.60E-12 dispersed
Lac8g2256 Lac-Chr8:40820319 Lac9g2706 Lac-Chr9:45338846 7.60E-24 dispersed
Lac8g2256 Lac-Chr8:40820319 Lac6g0298 Lac-Chr6:2420220 7.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24324 PF00170 bZIP_1 2.00E-12 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2256 K14432 - csv:101213915 508.834