Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2263 ATGGATTCTACAACCCCGAACGACAACTCGGCGAATATCGAACTCACTCGTCGCTCTTCCTCGTCGCTGCAATCGAAGTCGTCGATTCCGGAAGTGGGTTCTAGTAGTTCTTTATCGAAGCCCGTCCTTCAAGGGTTTCGAGGTGCCGGTTCCATTTTCCAGAACGAGAGCGGCGATGAACCTATGAGGTTGGTTTACATCGATGATCCTGAAAAGACGAACGAGAACTTTGATTTCGCTGGTAATTCGATTCGTACTGGCAAGTATTCGATTATTACTTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATATATATTTCCTTGTTGTTTCGGTTCTTAGTCAACTTCCCCAGCTTGCCGTTTTTGGCCGGGGAGTCTCGGTTACCCCTCTAGCCTCTGTGCTGCTAGTTACAGCAGTTAAAGATGCATACGAGGACTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAACCGGTTGGCGTCTGTTTTGGTAAATGGTGAGTTTCAAGCCAAGAAATGGAAGGATATTAGAGTTGGTGAGGTAATTAAAATTGGTGCCAACGAATCCTTTCCATGTGATATGGTGCTTCTCTCTACAAGCGATTCCACAGGGGTTGCGTTTGTGCAGACTCTGAATTTGGATGGGGAAGCAAATTTGAAAACCAAGTATGCCGAACAAGAGACAATGTCGAAAATGCCCGGCAAGGAGAAAATTGCTGGGTTGATTAAATCTGAATATCCCAATAGGGATATCTATGGATTCCATGCTACTATGGAAATTGATGGGAAGCGCCGGTCCCTTGAACCTGCGAACATAGTTCTTCGTGGGTGTGAGCTCAAGAATACTAGTTGGGTTGTTGGTGTAGCTGTATATGCTGGCCGTGAGACCAAAGCAATGCTTAACAGCTCTGGAGCTCCATTAAAAAGAAGCTGGCTCGAAACTCGGAAGGACAAGGAGATTATGATACTCTCTTTGTTTCTTATTGCTCTGTGTACAGTCGTTTGTGTTTGTGCTGCTGTTTGGTTCATCAGAAATGGGGAATATTTGGACATTATACCTTTTTTCAGAAAGAAGGATTTCTCTGTAGACCCACCTGAAACTTATAATTACTATGGCTGGGGATTAGTTGCATTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATTCCCATTTCACTTTACATTTCAATGGAGCTCGTTCGCCTCGGCCAGGCTTATTTCATGATTCAAGACACCGGAATGTATGATGAAACATCAAATTCAAGATTCCAGTGTCGGGCTCTGAACATAAATGAGGATTTAGGACAAATAAGGTATGTGTTTGCGGATAAAACAGGTACCCTTACTGAGAATAAGATGGAATTTCGATGCGCAAGCATCTGGGGGATCAATTATGGAGGCGAAAGAACCAATCCCTTGGGCGAGCAGACTGGATACTCTGTTCAAGTGAATGAAAATGTATTGAGACCAAAAATTGTAGTCAAAACCAATTCTGAGCTTCTGGGGTTATTAAAAAGTGGAAAGAACACTGAGGAAGGGAAATATATTCACAATTTCTTCCTTACATTAGCCGCATGCAATACCATTGTTCCTCTCATTACTGAAACTTCTGATCCTTCAATACAATTAATTGACTACCAAGGGGAATCTCAAGATGAACAGGCTTTGGTTTATGCTGCTGCGGCATATGGTTTTATGCTAATTGAACGAACAGCTGGCCATATAGTTATTGACATACATGGTGAAAAGCAAAGGTACAACATTTTGGGAATGCATGAGTTTGATAGTGATAGGAAGCGGATGTCAATGATACTGGGGTGTCCTGATATGACGTTCAAGGTATTTGTAAAAGGTGCTGACACCTCCATGTTTAAGGTGATGGGTGAAATTTTGAACATGGATATCATTCAAGATACTAAAGCACATCTTCATTCATATTCCTCAAAGGGTTTCAGGACACTAGTTATTGGGATGAAAGAACTCAGTCCATCTGACTTTGAGAAATGGCACTTGATGTTTGAGGAAGCAAGTGCCACTCTGATTGGAAGGGCTGCTCTACTTAGTAAGGTTGCTAGTGACATAGAAAACAATATATGCATATTGGGTGCCTTAGGCATTGAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCATAGAATCTTTAAGGACTGCCGGAATTAAAGTGTGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATTTCAATTGGTTACTCCTCAAGGCTGTTAACAAACAAGATGATTCAAATTATAATTAACAACAACTCGGTGGAATCATGCCGAAGGAGTTTAGAAAATGCAATAATCATGTTGAAGAAGTTTGCTTGTGCGCCAGGGGTTATGCTGGAGAGTGGAAGAAGCACTGAAATTGTAACAACTTCGGTTGCATTGATTATTGATGGTACCAGCCTCGTTTATATACTTGGACGTGAACTTGAAGAACAGCTTTTCGAACTAGCTTCTATCTGTTCAGTTGTATTATGCTGTCGAGTTGTCCCATTGCAGAAAGCTGGAATTGTTGCTCTCGTCAAGGGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGCGCGAATGATGTGCAAATGATCCAAATGGCGGATGTGGGCATAGGTATTAGCGGTCTAGAAGGTCGACAAGCTGTCATGGCATCAGATTTTGCCATGGGGCAATTTAGATTTTTGGTTTCTCTTCTATTGGTCCATGGACATTGGAATTACCAGAGGATGGGCTACATGATTTTGTACACTTTTTATAGAAATGCTGTGTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACCGGTTTCTCGTTGACGACGGCGATCAACCAGTGGAGCAACGTGCTCTACTCTATAGTCTATACTTCTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGGACTCTTCTTAGATACCCTCAGCTCTATGGGGCTGGCCTTAGACAGGAGGGTTATAACTCTAGATTGTTTTGGTTAACGATGATTGACTCTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTTCATATTGGGCTACCACCATCGACGATTCTAGCCTGGGAGATCTCTGGCTACTTGCCTTGGTCGCTGTTGTCAACTTGCACTTGGCAATGGACGTTGTTCGATGGAACTCCATCACCCATGCTGTGATTTGGGGATCCATTCTTGCAACTGTCATTTGTGTCATTGTGCTTGATTCGTCAGTTTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGGGCATGGTGCCTTTTTGGCTATGTTTGTTGGCAATTTTTGTAGTAGCGTTACTTCCTCGTTTTGTTGTAAAATACCTTTACCAGTATTGCAGTCCATGTGACATCCAGGTAGTAAGAGAGGCAGATAAGTTTGGAAGGACAAGAGAGTTGGCAGATGTACAAACAGAGACGATCCCCGTCCTCAACAACACTTCACAAGTATATTTACTCGATGCTCTAGTTCACCAATTGTTGAAGCTACCTGTCCAGTCGCCATCCATCCAACTTCGACAGAGGGTGCGGGGGCCAGACTACTTTGCCAGTGTTCTTCTTCACGTTGTGCTTTGGGTATTCCTCTTATCTCTAAGTCAAGGTCAACGCCCCTAA 3675 42.91 MDSTTPNDNSANIELTRRSSSSLQSKSSIPEVGSSSSLSKPVLQGFRGAGSIFQNESGDEPMRLVYIDDPEKTNENFDFAGNSIRTGKYSIITFLPRNLFEQFHRIAYIYFLVVSVLSQLPQLAVFGRGVSVTPLASVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVNGEFQAKKWKDIRVGEVIKIGANESFPCDMVLLSTSDSTGVAFVQTLNLDGEANLKTKYAEQETMSKMPGKEKIAGLIKSEYPNRDIYGFHATMEIDGKRRSLEPANIVLRGCELKNTSWVVGVAVYAGRETKAMLNSSGAPLKRSWLETRKDKEIMILSLFLIALCTVVCVCAAVWFIRNGEYLDIIPFFRKKDFSVDPPETYNYYGWGLVAFFVFLMSVIVFQIMIPISLYISMELVRLGQAYFMIQDTGMYDETSNSRFQCRALNINEDLGQIRYVFADKTGTLTENKMEFRCASIWGINYGGERTNPLGEQTGYSVQVNENVLRPKIVVKTNSELLGLLKSGKNTEEGKYIHNFFLTLAACNTIVPLITETSDPSIQLIDYQGESQDEQALVYAAAAYGFMLIERTAGHIVIDIHGEKQRYNILGMHEFDSDRKRMSMILGCPDMTFKVFVKGADTSMFKVMGEILNMDIIQDTKAHLHSYSSKGFRTLVIGMKELSPSDFEKWHLMFEEASATLIGRAALLSKVASDIENNICILGALGIEDKLQKGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSRLLTNKMIQIIINNNSVESCRRSLENAIIMLKKFACAPGVMLESGRSTEIVTTSVALIIDGTSLVYILGRELEEQLFELASICSVVLCCRVVPLQKAGIVALVKGRTSDMTLAIGDGANDVQMIQMADVGIGISGLEGRQAVMASDFAMGQFRFLVSLLLVHGHWNYQRMGYMILYTFYRNAVFVLVLFWYVLFTGFSLTTAINQWSNVLYSIVYTSLPTIVVGILDKDLGRRTLLRYPQLYGAGLRQEGYNSRLFWLTMIDSVWQSIAIFFIPLLSYWATTIDDSSLGDLWLLALVAVVNLHLAMDVVRWNSITHAVIWGSILATVICVIVLDSSVSLPGYWAIYHVAGMVPFWLCLLAIFVVALLPRFVVKYLYQYCSPCDIQVVREADKFGRTRELADVQTETIPVLNNTSQVYLLDALVHQLLKLPVQSPSIQLRQRVRGPDYFASVLLHVVLWVFLLSLSQGQRP 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40857384 40862284 + Lag0029650.1 Lac8g2263 618097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2263 1224 Gene3D - 551 694 IPR023299 GO:0000166(InterPro)
Lac8g2263 1224 Gene3D - 705 908 IPR023214 -
Lac8g2263 1224 MobiDBLite consensus disorder prediction 1 38 - -
Lac8g2263 1224 SFLD Haloacid Dehalogenase 433 919 - -
Lac8g2263 1224 Gene3D - 129 306 - -
Lac8g2263 1224 Pfam Cation transport ATPase (P-type) 557 633 - -
Lac8g2263 1224 NCBIfam phospholipid-translocating P-type ATPase 79 1143 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac8g2263 1224 NCBIfam HAD-IC family P-type ATPase 837 952 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac8g2263 1224 SUPERFAMILY Calcium ATPase, transduction domain A 162 303 IPR008250 -
Lac8g2263 1224 FunFam Phospholipid-transporting ATPase 708 908 - -
Lac8g2263 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 896 1135 IPR032630 -
Lac8g2263 1224 FunFam Phospholipid-transporting ATPase 137 306 - -
Lac8g2263 1224 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Lac8g2263 1224 PRINTS P-type cation-transporting ATPase superfamily signature 868 887 - -
Lac8g2263 1224 FunFam Phospholipid-transporting ATPase 553 686 - -
Lac8g2263 1224 Pfam Phospholipid-translocating ATPase N-terminal 65 130 IPR032631 -
Lac8g2263 1224 SUPERFAMILY HAD-like 436 909 IPR036412 -
Lac8g2263 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 81 1133 IPR023298 -
Lac8g2263 1224 SFLD p-type atpase 433 919 IPR044492 -
Lac8g2263 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 722 IPR023299 GO:0000166(InterPro)
Lac8g2263 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 59 1135 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac8g2263 1224 CDD P-type_ATPase_APLT_Dnf-like 81 1028 - -
Lac8g2263 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2263 Lac-Chr8:40857384 Lac8g2267 Lac-Chr8:40900203 0.00E+00 dispersed
Lac8g2263 Lac-Chr8:40857384 Lac8g2264 Lac-Chr8:40864383 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2263 K14802 - csv:101212953 1853.95