Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2267 | ATGGCGTCAGAGCGGCCGCTTTTGATTATATCTCCAAGAACACCCAAAACCATCTCTCACGATCTGCAGAAACCGGAGCCGAACCGACCTGGACTGTTCTTCGCCATGGATTCTCGAAGCCCTATTGAGAGCTCGGCGAGTACCGAACTGGGTCACCGCTCTTTCTCGCGGCGAAGTCAATCGTCGCTACAATCGAAGTCCTCTATTCGTGAAGTGGGTTCGAGTGATTTTGGATCGAGGCCTGTTCGTCATGGCTCTCGAGGTGCTGATTCTGAAGCACTGAGCATATCCCAGAAGGAGATCAGTGACGAAGATGCGAGGTTGGTTTACATCGATGAGCCTGAAAAGACGAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACTGGCAAGTATTCGATTCTAACTTTTCTGCCCAGGAATCTGTTTGAACAGTTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGGACAGTCTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCAGTTAAAGATGCTTATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGTCAGTTTCAACAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAAATTGGTGCTAATGACACTATTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCGACGGGGGTTGCATATGTGCAGACTCTGAATTTGGATGGGGAATCGAATTTGAAAACGAGGTATGCGAAACAAGAGACGATGTCGAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAGTGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGTGAGACCAAAGCCATGCTCAACAGTTCTGGAGCTCCGTCGAAAAGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTATTATGCTCTCTTTCTTTCTCATTGCTCTGTGTTTAGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATCAGAAATAAGGAAGATCTGGACACTTTACCTTATTTCAGAAATAAAGATTTCTCAGTAGACCCACCTGACACCTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATCCCTATTTCCCTTTACATTTCAATGGAGCTTGTTCGTGTCGGCCAGGCTTATTTCATGATCCGAGACGCCCAAATGTATGATGAAACATCAAATTCAAGATTTCAGTGCCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCAGACAAAACGGGTACCCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATCTGGGGGGCCGATTATGGAGGAGAAAGTACAGATCCCCTGGATGAGCAGATTGGATACTCTGTCAGAGTGAATGGAAAGGTTTTGAAACCGAAATTGGCTGTGAAAACCGATCCCGAGCTTCTACAGTTATCAGAAAGTGGAAATCGCACCAGGGATGGAAGATACATTCACGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCAAGTAATTGACTACCAAGGGGAGTCTCCAGATGAACAAGCATTGGTTTATGCTGCTGCGGCTTATGGTTTTATGCTAATAGAACGAACTTCTGGCCATATAGTTATTGACGTACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCGGTGATACTGGGGTGTCCCGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACATGAATATCGTTCAAGTGACTAAAGCTCATCTTCATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCTTCTGACTTTGATAAATGGCACTTGATGTTTGAGGAAGCAAGCACCGCTTTGATCGGTCGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATAGAAAAGAATCTGCTCATATTGGGTGCTTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAATGGCAGGAATTAAAGTATGGGTTTTGACTGGGGACAAGCAAGAAACGGCCATATCAATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGTAGAATCGTGCAAAAGGAGTTTAGAAGATGCAATAATGATGTCGAAGAAGCTTGCTATTGCCTCAAGGGTTACACTGGATGATGAAGAAAGCACTGAAGTTGTAACGACTTCGATTGCGTTGATCATTGATGGTAGTAGCCTCGTTCATATTCTCGACAGTAAACTCGAAGAACTGCTTTTCCAACTATCTGGTAACTGTTCGGTGGTGTTATGTTGTCGGGTCGCCCCATTGCAAAAAGCTGGAATCGTTGCTCTTGTCAAAAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCGAATGACGTGTCGATGATCCAAAAGGCAGATGTAGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCGGATTTTGCCATGGGGCAATTTAGATTCTTGGTTCCTCTTTTGTTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATTTTGTACAACTTTTACAGAAATGCAGTTTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACCGGTTTCTCGTTGACGACGGCGATCAACCAATGGAGCAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGAACTCTTCTTAGCTACCCTCAGCTCTATGGGGCAGGCCACAGACAAGAGGGCTACAACTCTAAATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGGTACCACCGTCGACATTTCGGGCCTCGGAGATCTCTGGCTACTTGCCGCAGTCATCGTCGTCAACTTGCACTTGGCAATGGATGTGTTTCGATGGTATACCGTCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTGTCATTTGCGTCATTGTTCTTGATTCGATAGTGTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGAGCACGGGGTCCTTCTGGCTGTGTTTGTTATCGATCGTCGTAGTAGCATTACTTCCTCGTTTTGTTGTAAAATACCTATATCAAAGTTACAGTCCATGTGACATCCAGATAGCAAGAGAGGCTGAGAGATTTGGAAGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCAACAATCCTTCACAAGTATGA | 3645 | 43.81 | MASERPLLIISPRTPKTISHDLQKPEPNRPGLFFAMDSRSPIESSASTELGHRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLVYIDEPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQQKKWKDIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIIMLSFFLIALCLVVCVLAAVWFIRNKEDLDTLPYFRNKDFSVDPPDTYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDAQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGADYGGESTDPLDEQIGYSVRVNGKVLKPKLAVKTDPELLQLSESGNRTRDGRYIHDFFLALAACNTIVPLITETSDPSVQVIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDVHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMFKVMGENLNMNIVQVTKAHLHSYSSKGLRTLVIGMKELSSSDFDKWHLMFEEASTALIGRAAKLRKVASSIEKNLLILGASGIEDKLQKGVPEAIEALRMAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSVESCKRSLEDAIMMSKKLAIASRVTLDDEESTEVVTTSIALIIDGSSLVHILDSKLEELLFQLSGNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQEGYNSKLFWLTMIDTVWQSIAIFFIPLLAYWGTTVDISGLGDLWLLAAVIVVNLHLAMDVFRWYTVTHAVIWGSTLATVICVIVLDSIVSLPGYWAIYHVASTGSFWLCLLSIVVVALLPRFVVKYLYQSYSPCDIQIAREAERFGRTRELGVVQTEMIPVLNNPSQV | 1214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 40900203 | 40904530 | + | Lag0029654.1 | Lac8g2267 | 618101 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2267 | 1214 | MobiDBLite | consensus disorder prediction | 40 | 74 | - | - | |
| Lac8g2267 | 1214 | FunFam | Phospholipid-transporting ATPase | 181 | 350 | - | - | |
| Lac8g2267 | 1214 | SUPERFAMILY | HAD-like | 480 | 953 | IPR036412 | - | |
| Lac8g2267 | 1214 | FunFam | Phospholipid-transporting ATPase | 597 | 730 | - | - | |
| Lac8g2267 | 1214 | Gene3D | - | 178 | 350 | - | - | |
| Lac8g2267 | 1214 | Pfam | Phospholipid-translocating ATPase N-terminal | 109 | 176 | IPR032631 | - | |
| Lac8g2267 | 1214 | Gene3D | - | 749 | 952 | IPR023214 | - | |
| Lac8g2267 | 1214 | PRINTS | P-type cation-transporting ATPase superfamily signature | 493 | 507 | - | - | |
| Lac8g2267 | 1214 | PRINTS | P-type cation-transporting ATPase superfamily signature | 912 | 931 | - | - | |
| Lac8g2267 | 1214 | NCBIfam | HAD-IC family P-type ATPase | 174 | 276 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac8g2267 | 1214 | NCBIfam | HAD-IC family P-type ATPase | 883 | 996 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac8g2267 | 1214 | NCBIfam | HAD-IC family P-type ATPase | 425 | 515 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lac8g2267 | 1214 | SFLD | p-type atpase | 477 | 963 | IPR044492 | - | |
| Lac8g2267 | 1214 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 495 | 501 | IPR018303 | - | |
| Lac8g2267 | 1214 | FunFam | Phospholipid-transporting ATPase | 752 | 952 | - | - | |
| Lac8g2267 | 1214 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 499 | 766 | IPR023299 | GO:0000166(InterPro) | |
| Lac8g2267 | 1214 | Pfam | Cation transport ATPase (P-type) | 601 | 677 | - | - | |
| Lac8g2267 | 1214 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 97 | 1180 | - | GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER) | |
| Lac8g2267 | 1214 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 122 | 1178 | IPR023298 | - | |
| Lac8g2267 | 1214 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 940 | 1179 | IPR032630 | - | |
| Lac8g2267 | 1214 | MobiDBLite | consensus disorder prediction | 1 | 96 | - | - | |
| Lac8g2267 | 1214 | NCBIfam | phospholipid-translocating P-type ATPase | 123 | 1187 | IPR006539 | GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro) | |
| Lac8g2267 | 1214 | SUPERFAMILY | Calcium ATPase, transduction domain A | 206 | 347 | IPR008250 | - | |
| Lac8g2267 | 1214 | Gene3D | - | 594 | 727 | IPR023299 | GO:0000166(InterPro) | |
| Lac8g2267 | 1214 | SFLD | C1.7: P-type atpase like | 477 | 963 | - | - | |
| Lac8g2267 | 1214 | CDD | P-type_ATPase_APLT_Dnf-like | 125 | 1072 | - | - | |
| Lac8g2267 | 1214 | Pfam | E1-E2 ATPase | 209 | 448 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0439 | Lac-Chr13:3104800 | Lac8g2267 | Lac-Chr8:40900203 | 2.70E-177 | dispersed | |
| Lac1g1774 | Lac-Chr1:39245090 | Lac8g2267 | Lac-Chr8:40900203 | 0.00E+00 | dispersed | |
| Lac8g1167 | Lac-Chr8:24782303 | Lac8g2267 | Lac-Chr8:40900203 | 1.90E-180 | dispersed | |
| Lac8g2263 | Lac-Chr8:40857384 | Lac8g2267 | Lac-Chr8:40900203 | 0.00E+00 | dispersed | |
| Lac8g2264 | Lac-Chr8:40864383 | Lac8g2267 | Lac-Chr8:40900203 | 0.00E+00 | dispersed | |
| Lac8g2267 | Lac-Chr8:40900203 | Lac9g0267 | Lac-Chr9:4319043 | 3.80E-46 | dispersed | |
| Lac8g2265 | Lac-Chr8:40876067 | Lac8g2267 | Lac-Chr8:40900203 | 0.00E+00 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2267 | K14802 | - | csv:101212953 | 2200.63 |