Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2267 ATGGCGTCAGAGCGGCCGCTTTTGATTATATCTCCAAGAACACCCAAAACCATCTCTCACGATCTGCAGAAACCGGAGCCGAACCGACCTGGACTGTTCTTCGCCATGGATTCTCGAAGCCCTATTGAGAGCTCGGCGAGTACCGAACTGGGTCACCGCTCTTTCTCGCGGCGAAGTCAATCGTCGCTACAATCGAAGTCCTCTATTCGTGAAGTGGGTTCGAGTGATTTTGGATCGAGGCCTGTTCGTCATGGCTCTCGAGGTGCTGATTCTGAAGCACTGAGCATATCCCAGAAGGAGATCAGTGACGAAGATGCGAGGTTGGTTTACATCGATGAGCCTGAAAAGACGAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACTGGCAAGTATTCGATTCTAACTTTTCTGCCCAGGAATCTGTTTGAACAGTTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGGACAGTCTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCAGTTAAAGATGCTTATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGTCAGTTTCAACAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAAATTGGTGCTAATGACACTATTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCGACGGGGGTTGCATATGTGCAGACTCTGAATTTGGATGGGGAATCGAATTTGAAAACGAGGTATGCGAAACAAGAGACGATGTCGAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAGTGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGTGAGACCAAAGCCATGCTCAACAGTTCTGGAGCTCCGTCGAAAAGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTATTATGCTCTCTTTCTTTCTCATTGCTCTGTGTTTAGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATCAGAAATAAGGAAGATCTGGACACTTTACCTTATTTCAGAAATAAAGATTTCTCAGTAGACCCACCTGACACCTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATCCCTATTTCCCTTTACATTTCAATGGAGCTTGTTCGTGTCGGCCAGGCTTATTTCATGATCCGAGACGCCCAAATGTATGATGAAACATCAAATTCAAGATTTCAGTGCCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCAGACAAAACGGGTACCCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATCTGGGGGGCCGATTATGGAGGAGAAAGTACAGATCCCCTGGATGAGCAGATTGGATACTCTGTCAGAGTGAATGGAAAGGTTTTGAAACCGAAATTGGCTGTGAAAACCGATCCCGAGCTTCTACAGTTATCAGAAAGTGGAAATCGCACCAGGGATGGAAGATACATTCACGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCAAGTAATTGACTACCAAGGGGAGTCTCCAGATGAACAAGCATTGGTTTATGCTGCTGCGGCTTATGGTTTTATGCTAATAGAACGAACTTCTGGCCATATAGTTATTGACGTACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCGGTGATACTGGGGTGTCCCGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATCTGAACATGAATATCGTTCAAGTGACTAAAGCTCATCTTCATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCTTCTGACTTTGATAAATGGCACTTGATGTTTGAGGAAGCAAGCACCGCTTTGATCGGTCGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATAGAAAAGAATCTGCTCATATTGGGTGCTTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAATGGCAGGAATTAAAGTATGGGTTTTGACTGGGGACAAGCAAGAAACGGCCATATCAATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGTAGAATCGTGCAAAAGGAGTTTAGAAGATGCAATAATGATGTCGAAGAAGCTTGCTATTGCCTCAAGGGTTACACTGGATGATGAAGAAAGCACTGAAGTTGTAACGACTTCGATTGCGTTGATCATTGATGGTAGTAGCCTCGTTCATATTCTCGACAGTAAACTCGAAGAACTGCTTTTCCAACTATCTGGTAACTGTTCGGTGGTGTTATGTTGTCGGGTCGCCCCATTGCAAAAAGCTGGAATCGTTGCTCTTGTCAAAAGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCGAATGACGTGTCGATGATCCAAAAGGCAGATGTAGGTGTTGGTATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCGGATTTTGCCATGGGGCAATTTAGATTCTTGGTTCCTCTTTTGTTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATTTTGTACAACTTTTACAGAAATGCAGTTTTTGTGCTTGTTTTATTTTGGTATGTGCTCTTTACCGGTTTCTCGTTGACGACGGCGATCAACCAATGGAGCAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGAACTCTTCTTAGCTACCCTCAGCTCTATGGGGCAGGCCACAGACAAGAGGGCTACAACTCTAAATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGGTACCACCGTCGACATTTCGGGCCTCGGAGATCTCTGGCTACTTGCCGCAGTCATCGTCGTCAACTTGCACTTGGCAATGGATGTGTTTCGATGGTATACCGTCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTGTCATTTGCGTCATTGTTCTTGATTCGATAGTGTCGCTTCCCGGTTACTGGGCGATATATCACGTGGCGAGCACGGGGTCCTTCTGGCTGTGTTTGTTATCGATCGTCGTAGTAGCATTACTTCCTCGTTTTGTTGTAAAATACCTATATCAAAGTTACAGTCCATGTGACATCCAGATAGCAAGAGAGGCTGAGAGATTTGGAAGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCAACAATCCTTCACAAGTATGA 3645 43.81 MASERPLLIISPRTPKTISHDLQKPEPNRPGLFFAMDSRSPIESSASTELGHRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLVYIDEPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQQKKWKDIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIIMLSFFLIALCLVVCVLAAVWFIRNKEDLDTLPYFRNKDFSVDPPDTYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDAQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGADYGGESTDPLDEQIGYSVRVNGKVLKPKLAVKTDPELLQLSESGNRTRDGRYIHDFFLALAACNTIVPLITETSDPSVQVIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDVHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMFKVMGENLNMNIVQVTKAHLHSYSSKGLRTLVIGMKELSSSDFDKWHLMFEEASTALIGRAAKLRKVASSIEKNLLILGASGIEDKLQKGVPEAIEALRMAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSVESCKRSLEDAIMMSKKLAIASRVTLDDEESTEVVTTSIALIIDGSSLVHILDSKLEELLFQLSGNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQEGYNSKLFWLTMIDTVWQSIAIFFIPLLAYWGTTVDISGLGDLWLLAAVIVVNLHLAMDVFRWYTVTHAVIWGSTLATVICVIVLDSIVSLPGYWAIYHVASTGSFWLCLLSIVVVALLPRFVVKYLYQSYSPCDIQIAREAERFGRTRELGVVQTEMIPVLNNPSQV 1214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 40900203 40904530 + Lag0029654.1 Lac8g2267 618101
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2267 1214 MobiDBLite consensus disorder prediction 40 74 - -
Lac8g2267 1214 FunFam Phospholipid-transporting ATPase 181 350 - -
Lac8g2267 1214 SUPERFAMILY HAD-like 480 953 IPR036412 -
Lac8g2267 1214 FunFam Phospholipid-transporting ATPase 597 730 - -
Lac8g2267 1214 Gene3D - 178 350 - -
Lac8g2267 1214 Pfam Phospholipid-translocating ATPase N-terminal 109 176 IPR032631 -
Lac8g2267 1214 Gene3D - 749 952 IPR023214 -
Lac8g2267 1214 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Lac8g2267 1214 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Lac8g2267 1214 NCBIfam HAD-IC family P-type ATPase 174 276 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac8g2267 1214 NCBIfam HAD-IC family P-type ATPase 883 996 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac8g2267 1214 NCBIfam HAD-IC family P-type ATPase 425 515 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac8g2267 1214 SFLD p-type atpase 477 963 IPR044492 -
Lac8g2267 1214 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Lac8g2267 1214 FunFam Phospholipid-transporting ATPase 752 952 - -
Lac8g2267 1214 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166(InterPro)
Lac8g2267 1214 Pfam Cation transport ATPase (P-type) 601 677 - -
Lac8g2267 1214 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 97 1180 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Lac8g2267 1214 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1178 IPR023298 -
Lac8g2267 1214 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1179 IPR032630 -
Lac8g2267 1214 MobiDBLite consensus disorder prediction 1 96 - -
Lac8g2267 1214 NCBIfam phospholipid-translocating P-type ATPase 123 1187 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Lac8g2267 1214 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
Lac8g2267 1214 Gene3D - 594 727 IPR023299 GO:0000166(InterPro)
Lac8g2267 1214 SFLD C1.7: P-type atpase like 477 963 - -
Lac8g2267 1214 CDD P-type_ATPase_APLT_Dnf-like 125 1072 - -
Lac8g2267 1214 Pfam E1-E2 ATPase 209 448 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0439 Lac-Chr13:3104800 Lac8g2267 Lac-Chr8:40900203 2.70E-177 dispersed
Lac1g1774 Lac-Chr1:39245090 Lac8g2267 Lac-Chr8:40900203 0.00E+00 dispersed
Lac8g1167 Lac-Chr8:24782303 Lac8g2267 Lac-Chr8:40900203 1.90E-180 dispersed
Lac8g2263 Lac-Chr8:40857384 Lac8g2267 Lac-Chr8:40900203 0.00E+00 dispersed
Lac8g2264 Lac-Chr8:40864383 Lac8g2267 Lac-Chr8:40900203 0.00E+00 dispersed
Lac8g2267 Lac-Chr8:40900203 Lac9g0267 Lac-Chr9:4319043 3.80E-46 dispersed
Lac8g2265 Lac-Chr8:40876067 Lac8g2267 Lac-Chr8:40900203 0.00E+00 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2267 K14802 - csv:101212953 2200.63