Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2327 ATGGCAGCGCCAAAGCCTCGCACCACTCGCTCCAGGTCTCACAGGGAGGTTCCGGATTTGGAGAAGATGGACGGTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCCGTTCCGCGGTCGGTTTCGCGTGTGAACTTGGATTGCTTGCTTGAAGCCGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTAAATACTGATGAGGCGGGTACACTGTTTGTAACCAATTTTCGTCTTCTCTTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGCACTATACCACTGGCGGCAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATTCTGTCTCTCGCCAATCTGAAAAGTCTACATCTAGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGCATTATTGAAGTGTATGAAACCTGCAAGGATATGGGATCTATATGCATTCAAGTCCGGACCATCCAAGTACAGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTTCGTGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAACATCAATTCGAATTATACTCTGTGTCAGAGTTATCCATTTGCGTTGGTTGTTCCAAAACACATTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTTCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCCCGTTCATCTCAACCTTTAGTTGGTCTGATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGAGCTTTGCTCGCATCTTGGTGGTGTTCAAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCTAATGGAGCTATGGGAGGTGGCTCGGAATCTTCATCAAATTATTTTCAATGTGAGATAGTTTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGCAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGCGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCGACTCTAGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACAGTGCTAGTTCATTGTAGTGATGGTTGGGACAGAACATCACAACTAGTTTCACTTGCTAGCTTACTACTTGATCCTTATTATCGGACATTCGCTGGATTTCAGGCACTAGTTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCACACCAACCATATCGGGAAGCGGTAACATGCCGTATGAACTCTCTAGGCAGTCTTCAACTGGAAGTTTACCTCCTTCACCTATGCGTCAGCCATCAGGATCATTCACATCTCAAGCTTCGAGTCCTCCACATGCACAAACATCAAACAACTGTTCTCCCATCTTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTGGTGGATCTGTTGGATGGTATGCTTTCCTGTCGCTTTGGGAACTTCTTGTGCAATTGTGAGAAGGAGCGGCAGCAATGTGCAGTTTCTGAAGTTTGCGGCTGTTTATGGGCGTATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCACATGTGCATTATAACCTCTTCTACGATCCAACCAAACATGAAGGGCCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTTTGGCCACAGTTCCATCTTCGTTGGGCTTGTCCTAAGGAATCCCAAGCTGGGGAACTTGAAGCAAGATGCAGGAGAATGGCTATAAAATTCTCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAAGAGATGACATCTGCCATGGAATCATTAAAAGCAGAGTTGCAAAACGAGAAACAATCAAGTATATCTGCTATGAATGTAGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGCTGCAAGGTTGAAGTTTCTAGTAATGGTTATTGTACTGTTGACATTGAGGGCGACCTGATAAAATCCAATCAGAAAATTCATCCTGCTTCAAGAAAGGTTTCACATCGTTCACTGTCTGTTAGTGGAGAGAATGACCTCCCCCTTTCTATCACAGTTACAGCAGATGATGTGCCAAGCAACCCTCTCGGTCACGTCTGTGAAGCTCTTTGCCCGTTGCGCACTCGGGACGGAGGGTGCCGGTGGCCCGATGCTGGTTGTGCTCGTTTGGGTAGCCAATTTATTGGACTGAAGGCAAATTTCGATGCATTTGATAAACTATCCCTATACGATGGTTATTTCAAGCCAGAGTGA 2565 44.09 MAAPKPRTTRSRSHREVPDLEKMDGAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLAAIDKFNKIVVKTNSVSRQSEKSTSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLKCMKPARIWDLYAFKSGPSKYSNTDPKVRLLNEYFRLLGKGSLRASMSMIEDGSFTLSNELWRITNINSNYTLCQSYPFALVVPKHISDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAELCSHLGGVQGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQCEIVFFGIDNIHAMRESLTRLREYLDTHGAKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTSQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGTPTISGSGNMPYELSRQSSTGSLPPSPMRQPSGSFTSQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDGMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHYNLFYDPTKHEGPLLPPAAALAPTLWPQFHLRWACPKESQAGELEARCRRMAIKFSEMQKDKEIAERKAQEMTSAMESLKAELQNEKQSSISAMNVAKSASKECEAIKRAIQSLGCKVEVSSNGYCTVDIEGDLIKSNQKIHPASRKVSHRSLSVSGENDLPLSITVTADDVPSNPLGHVCEALCPLRTRDGGCRWPDAGCARLGSQFIGLKANFDAFDKLSLYDGYFKPE 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41409666 41423644 + Lag0029714.1 Lac8g2327 618161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2327 854 SUPERFAMILY PH domain-like 51 174 - -
Lac8g2327 854 Pfam Myotubularin-like phosphatase domain 215 595 IPR010569 -
Lac8g2327 854 SMART gram2001c 43 111 IPR004182 -
Lac8g2327 854 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311(InterPro)
Lac8g2327 854 Coils Coil 678 712 - -
Lac8g2327 854 CDD PTP-MTM-like 261 555 - -
Lac8g2327 854 Gene3D - 63 162 IPR011993 -
Lac8g2327 854 ProSiteProfiles Myotubularin phosphatase domain. 198 653 IPR010569 -
Lac8g2327 854 MobiDBLite consensus disorder prediction 491 538 - -
Lac8g2327 854 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 215 657 IPR029021 -
Lac8g2327 854 PANTHER MYOTUBULARIN-RELATED 50 785 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2327 K18081 - - csv:101204839 1581.23
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35