Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2372 ATGTTTGCTACCACTGGCATTCTGTTCTTCATCTGGCTTTTAAGCTCCTCTCTGCCTCCTCTTGCTATGGCAGCTTTCAATTTCAATGTCACTGTCCCTCATCTTCTTCCAGATCCTGAAACTGTTGCTTATGAAGTTCAGAGGAGTGTGAATGATTCCTTTTCCAGAAGGGAAATGCTGTCAATTCATTCGAAAGGGCAATCGAATTCCTGTCAAACTGGAAACCCTATTGATGAGTGTTGGCGCTGCGACTCGAACTGGCAAGCCAATCGCCAACGACTCGCCGATTGCGGCATTGGATTTGGCCGAGAGGCCATGGGAGGCAAAGGAGGTCAGATCTACATAGTTACAGATTCCTCCGATTCCGACCCCGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTGGTCCAAGACGAACCTCTCTGGATCGTCTTCGCCGCCGACATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGAGGCGCCAATGTCCACATCACCGGCGGCGGTTGCATCACGCTGCAGTACATCTCGAACGTAATCATCCACAACATCAACATTCACCACTGTATCCCCACTGGCCACACCAACATCCGATCAAGTCCCACGCACGTTGGATACAGAGGAAAGTCCGACGGCGACGGAATCTCGATCTTCAGCTCGCGCAACATATGGATCGACCATTGCTCGCTCTCGTACTGTACCGACGGCTTAATCGACGCCATTATGGGATCGACTGGAATCACGATCTCGAACAACTACTTCTCGCACCACGATGAGGTGATGCTGCTAGGGCACGACGACGGCTTCTCGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTGGTTCAGCGGATGCCGCGGTGCCGGCGGGGGTATATTCACGTCGTCAACAACGATTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGGTCCGACGATCAACAGCCAGGGGAATCGGTATATTGCTCCGGGGAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGAGACTGGTCGGAGTGGAACTGGAGAACGGAGGGGGACATAATGGTAAATGGAGCGTTTTTTGTGCCGTCTGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTGTGGCGCCCAAATCCGCCGCTCTCGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGGCCCAGGGAGAGTAGACAGAGCAACTCATATCCCGGAGACGAAAGCTCCTCTAGTTCGGGGTCAAGTGGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGCGGGGGAGGGGTGAACAGTGCACCACCTCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGCTTACTATTTTAGTTCTGTACACGAACTCAAACTATGATGCTTTATCATCACTGACAACATTGTCATTGTAG 1497 52.71 MFATTGILFFIWLLSSSLPPLAMAAFNFNVTVPHLLPDPETVAYEVQRSVNDSFSRREMLSIHSKGQSNSCQTGNPIDECWRCDSNWQANRQRLADCGIGFGREAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFSPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGGPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDQLTLNAGVFGGPRESRQSNSYPGDESSSSSGSSGSDGGGDYFGMIFGGGGVNSAPPPSLSVVNMIILTLLTILVLYTNSNYDALSSLTTLSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41832794 41837159 + Lag0029759.1 Lac8g2372 618206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2372 498 MobiDBLite consensus disorder prediction 415 441 - -
Lac8g2372 498 MobiDBLite consensus disorder prediction 418 441 - -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Lac8g2372 498 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Lac8g2372 498 Pfam Pectate lyase 157 326 IPR002022 -
Lac8g2372 498 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Lac8g2372 498 Gene3D - 74 416 IPR012334 -
Lac8g2372 498 PANTHER PECTATE LYASE 18-RELATED 28 415 IPR045032 GO:0030570(InterPro)
Lac8g2372 498 FunFam Pectate lyase 74 416 - -
Lac8g2372 498 SMART amb_all 149 346 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2071 Lac-Chr1:42235155 Lac8g2372 Lac-Chr8:41832794 9.10E-39 dispersed
Lac8g2372 Lac-Chr8:41832794 Lac8g2540 Lac-Chr8:43165558 2.90E-141 dispersed
Lac1g2192 Lac-Chr1:43364350 Lac8g2372 Lac-Chr8:41832794 5.70E-179 wgd
Lac13g0672 Lac-Chr13:5111088 Lac8g2372 Lac-Chr8:41832794 1.70E-189 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2372 K01728 - csv:101207535 867.84