Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2407 ATGGGATCCCACCGTGAAAATGGCAGCGTTGGAGTCTGGGTGGAGCCGCCCTCTTTGTGCGGCGGCGGCGTGGCGGCTTATTGGAGCGACATGGCGGAGGGGCTCAAGGGGAGCCATTTGGAGGAGTTCAAGCGCATGGTGGAGGAATTTCGCCGCCCTATGGTTCGGCTCGGCGGTGAGAGCCTCACGATAGCACAAGTCGCTGCCATTGCTGCTCGTGGCTCCGATGTTGCGGTGGAGCTCTCTGAGGCGGCTCGCCCTGCTGTGGAGGCGAGTAGTAATTGGGTTGCTAAGAGCATGACCGTTGGGACTGATAGTTATGGTATCACGACTGGCTTTGGTTCTACCTCGCATCGTAGAACCGATCAAGGAGAAGACCTTCAAAAAGAGTTGATTAGATTCTTGAACGCTGGAATTTTCGGGAAGGATTCAAATTTGTGCCACACATTGCCACTATCTACCACAAGAGCCGCCATGCTTGTGAGAATCAACACCCTTTTGCAAGGCTATTCTGGCATTAGGTTCGAGATTTTGGAAGCCATAACCAAATTCCTAAACCACAACATAACTCCATGTCTTCCTCTTAGAGGAACCATCACAGCTTCTGGTGACCTAGTTCCACTTTCATACATTGCTGGGCTTTTGACTGGGAGGCCCAACTCCAAGGCCATTGGGCCCAATGGTGAATCTCTTAGCCCAATTGAAGCCTTTCATTTTGCTGGGATTAGTGGTGGTTTCTTTCGTTTGCAACCCAAAGAGGGCCTTGCACTTGTCAATGGCACTGCGGTTGGCTCTGGTTTGGCTTCCATTGTTCTTTTCGAGGCAAACTTTCTTGCTATATTTTCTGAGATCTTGTCAGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAGTTTACAGACCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCGGCTGCAATTATGGAGCATGTATTGGATGGAAGTTCGTATGTCAAAGCTGCTAAAAAATTGCATGAAATTGACCCACTTCAAAAGCCTAAACAAGACCGATATGCTCTTAGAACCTCCCCTCAATGGCTTGGTCCTCAAATTGAAGTAATTAGGCACTCCACCAAAATGATTGAACGTGAGATTAACTCGGTCAATGATAATCCGTTGATTGATGTATCGAGAAACAAGGCTTTGCATGGAGGAAACTTCCAAGGTACTTCCATTGGTGTCTCCATGGACAATACTCGCTTAGCTATTGCTTCTATAGGCAAACTCATGTTTGCACAATTCTCGGAGCTCGTCAACGACTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAACCCAAGTTTGGATTACGGGTTCAAAGGTGCTGAGATCGCAATGGCTTCGTACTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAATCATGTCCAAAGCGCCGAGCAACATAATCAAGACGTGAACTCATTGGGGTTGATATCGTCAAGAAAGACAGAAGAGGCTGTTGAGATATTGAAGCTTATGTCCATTACTTACTTGGTGGCGTTGTGTCAGGCAATCGATTTAAGACACATGGAGGAGAATTTGAAGAAAACAGTAAAGAACACTGTCAGTCAAGTGGCAAAGAAGATCCTTGTGTTGGACTTTAATGGCAATCTCCATCCAATTAGATATAGTGAAAAGGACTTACTTCAAGTCGTGGATCGAGAACATGTTTTTACCTATATAGATGACCCTTGCAGTGCTTCATATCCATTGATACAAAAGCTTAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAGAGAGAGCAACACAAGCACTTCAATCTTCCTAAAGATCACAACTTTTGAAGAAGAACTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCACGGATGGAAGTGGAGAATGGGAGCCCTACAGTTGAAAACCAAATTAAAGAATGTCGATCGTATCCATTGTACAAGTTCATTAGAGAAACGTTGGGGACTCGGATGTTGACTGGTGAGAAAGATGTTTCACCTGGAGAAGAATTCGATAAGGTTTTTTCAGCCATTACCGCTGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGATCCACTCCCTCTGAGTTAG 2148 45.16 MGSHRENGSVGVWVEPPSLCGGGVAAYWSDMAEGLKGSHLEEFKRMVEEFRRPMVRLGGESLTIAQVAAIAARGSDVAVELSEAARPAVEASSNWVAKSMTVGTDSYGITTGFGSTSHRRTDQGEDLQKELIRFLNAGIFGKDSNLCHTLPLSTTRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLSPIEAFHFAGISGGFFRLQPKEGLALVNGTAVGSGLASIVLFEANFLAIFSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHVLDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTSIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSITYLVALCQAIDLRHMEENLKKTVKNTVSQVAKKILVLDFNGNLHPIRYSEKDLLQVVDREHVFTYIDDPCSASYPLIQKLRQVLVDHALKNGERESNTSTSIFLKITTFEEELKALLPKEVENARMEVENGSPTVENQIKECRSYPLYKFIRETLGTRMLTGEKDVSPGEEFDKVFSAITAGKLIDPMLECLKDWNGDPLPLS 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42161594 42165188 - Lag0029794.1 Lac8g2407 618241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2407 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841(InterPro)
Lac8g2407 715 Gene3D - 528 649 IPR023144 -
Lac8g2407 715 SUPERFAMILY L-aspartase-like 27 714 IPR008948 GO:0003824(InterPro)
Lac8g2407 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Lac8g2407 715 FunFam Phenylalanine ammonia-lyase 23 261 - -
Lac8g2407 715 PANTHER HISTIDINE AMMONIA-LYASE 27 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lac8g2407 715 FunFam Phenylalanine ammonia-lyase 262 542 - -
Lac8g2407 715 Gene3D - 24 261 IPR024083 -
Lac8g2407 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Lac8g2407 715 CDD PAL-HAL 60 525 IPR001106 -
Lac8g2407 715 NCBIfam phenylalanine ammonia-lyase 27 705 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lac8g2407 715 Pfam Aromatic amino acid lyase 62 542 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1061 Lac-Chr3:8697552 Lac8g2407 Lac-Chr8:42161594 1.20E-238 dispersed
Lac7g1465 Lac-Chr7:15374003 Lac8g2407 Lac-Chr8:42161594 6.40E-279 dispersed
Lac7g1470 Lac-Chr7:15432577 Lac8g2407 Lac-Chr8:42161594 1.90E-286 dispersed
Lac1g2141 Lac-Chr1:42845941 Lac8g2407 Lac-Chr8:42161594 0.00E+00 wgd
Lac13g0700 Lac-Chr13:5324893 Lac8g2407 Lac-Chr8:42161594 0.00E+00 wgd
Lac8g2407 Lac-Chr8:42161594 Lac9g2599 Lac-Chr9:44527799 6.10E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2407 K10775 - csv:101206890 1239.94