Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2407 | ATGGGATCCCACCGTGAAAATGGCAGCGTTGGAGTCTGGGTGGAGCCGCCCTCTTTGTGCGGCGGCGGCGTGGCGGCTTATTGGAGCGACATGGCGGAGGGGCTCAAGGGGAGCCATTTGGAGGAGTTCAAGCGCATGGTGGAGGAATTTCGCCGCCCTATGGTTCGGCTCGGCGGTGAGAGCCTCACGATAGCACAAGTCGCTGCCATTGCTGCTCGTGGCTCCGATGTTGCGGTGGAGCTCTCTGAGGCGGCTCGCCCTGCTGTGGAGGCGAGTAGTAATTGGGTTGCTAAGAGCATGACCGTTGGGACTGATAGTTATGGTATCACGACTGGCTTTGGTTCTACCTCGCATCGTAGAACCGATCAAGGAGAAGACCTTCAAAAAGAGTTGATTAGATTCTTGAACGCTGGAATTTTCGGGAAGGATTCAAATTTGTGCCACACATTGCCACTATCTACCACAAGAGCCGCCATGCTTGTGAGAATCAACACCCTTTTGCAAGGCTATTCTGGCATTAGGTTCGAGATTTTGGAAGCCATAACCAAATTCCTAAACCACAACATAACTCCATGTCTTCCTCTTAGAGGAACCATCACAGCTTCTGGTGACCTAGTTCCACTTTCATACATTGCTGGGCTTTTGACTGGGAGGCCCAACTCCAAGGCCATTGGGCCCAATGGTGAATCTCTTAGCCCAATTGAAGCCTTTCATTTTGCTGGGATTAGTGGTGGTTTCTTTCGTTTGCAACCCAAAGAGGGCCTTGCACTTGTCAATGGCACTGCGGTTGGCTCTGGTTTGGCTTCCATTGTTCTTTTCGAGGCAAACTTTCTTGCTATATTTTCTGAGATCTTGTCAGCCATTTTTGCTGAGGTTATGCAAGGAAAGCCTGAGTTTACAGACCATTTGACTCATAAGTTGAAGCACCATCCTGGTCAAATTGAAGCGGCTGCAATTATGGAGCATGTATTGGATGGAAGTTCGTATGTCAAAGCTGCTAAAAAATTGCATGAAATTGACCCACTTCAAAAGCCTAAACAAGACCGATATGCTCTTAGAACCTCCCCTCAATGGCTTGGTCCTCAAATTGAAGTAATTAGGCACTCCACCAAAATGATTGAACGTGAGATTAACTCGGTCAATGATAATCCGTTGATTGATGTATCGAGAAACAAGGCTTTGCATGGAGGAAACTTCCAAGGTACTTCCATTGGTGTCTCCATGGACAATACTCGCTTAGCTATTGCTTCTATAGGCAAACTCATGTTTGCACAATTCTCGGAGCTCGTCAACGACTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAACCCAAGTTTGGATTACGGGTTCAAAGGTGCTGAGATCGCAATGGCTTCGTACTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAATCATGTCCAAAGCGCCGAGCAACATAATCAAGACGTGAACTCATTGGGGTTGATATCGTCAAGAAAGACAGAAGAGGCTGTTGAGATATTGAAGCTTATGTCCATTACTTACTTGGTGGCGTTGTGTCAGGCAATCGATTTAAGACACATGGAGGAGAATTTGAAGAAAACAGTAAAGAACACTGTCAGTCAAGTGGCAAAGAAGATCCTTGTGTTGGACTTTAATGGCAATCTCCATCCAATTAGATATAGTGAAAAGGACTTACTTCAAGTCGTGGATCGAGAACATGTTTTTACCTATATAGATGACCCTTGCAGTGCTTCATATCCATTGATACAAAAGCTTAGACAAGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAGAGAGAGCAACACAAGCACTTCAATCTTCCTAAAGATCACAACTTTTGAAGAAGAACTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCACGGATGGAAGTGGAGAATGGGAGCCCTACAGTTGAAAACCAAATTAAAGAATGTCGATCGTATCCATTGTACAAGTTCATTAGAGAAACGTTGGGGACTCGGATGTTGACTGGTGAGAAAGATGTTTCACCTGGAGAAGAATTCGATAAGGTTTTTTCAGCCATTACCGCTGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGATCCACTCCCTCTGAGTTAG | 2148 | 45.16 | MGSHRENGSVGVWVEPPSLCGGGVAAYWSDMAEGLKGSHLEEFKRMVEEFRRPMVRLGGESLTIAQVAAIAARGSDVAVELSEAARPAVEASSNWVAKSMTVGTDSYGITTGFGSTSHRRTDQGEDLQKELIRFLNAGIFGKDSNLCHTLPLSTTRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESLSPIEAFHFAGISGGFFRLQPKEGLALVNGTAVGSGLASIVLFEANFLAIFSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHVLDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTSIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAVEILKLMSITYLVALCQAIDLRHMEENLKKTVKNTVSQVAKKILVLDFNGNLHPIRYSEKDLLQVVDREHVFTYIDDPCSASYPLIQKLRQVLVDHALKNGERESNTSTSIFLKITTFEEELKALLPKEVENARMEVENGSPTVENQIKECRSYPLYKFIRETLGTRMLTGEKDVSPGEEFDKVFSAITAGKLIDPMLECLKDWNGDPLPLS | 715 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42161594 | 42165188 | - | Lag0029794.1 | Lac8g2407 | 618241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2407 | 715 | ProSitePatterns | Phenylalanine and histidine ammonia-lyases signature. | 197 | 213 | IPR022313 | GO:0016841(InterPro) | |
Lac8g2407 | 715 | Gene3D | - | 528 | 649 | IPR023144 | - | |
Lac8g2407 | 715 | SUPERFAMILY | L-aspartase-like | 27 | 714 | IPR008948 | GO:0003824(InterPro) | |
Lac8g2407 | 715 | Gene3D | Fumarase/aspartase (Central domain) | 262 | 709 | - | - | |
Lac8g2407 | 715 | FunFam | Phenylalanine ammonia-lyase | 23 | 261 | - | - | |
Lac8g2407 | 715 | PANTHER | HISTIDINE AMMONIA-LYASE | 27 | 714 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
Lac8g2407 | 715 | FunFam | Phenylalanine ammonia-lyase | 262 | 542 | - | - | |
Lac8g2407 | 715 | Gene3D | - | 24 | 261 | IPR024083 | - | |
Lac8g2407 | 715 | FunFam | Phenylalanine ammonia-lyase | 528 | 649 | - | - | |
Lac8g2407 | 715 | CDD | PAL-HAL | 60 | 525 | IPR001106 | - | |
Lac8g2407 | 715 | NCBIfam | phenylalanine ammonia-lyase | 27 | 705 | IPR005922 | GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro) | |
Lac8g2407 | 715 | Pfam | Aromatic amino acid lyase | 62 | 542 | IPR001106 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac3g1061 | Lac-Chr3:8697552 | Lac8g2407 | Lac-Chr8:42161594 | 1.20E-238 | dispersed | |
Lac7g1465 | Lac-Chr7:15374003 | Lac8g2407 | Lac-Chr8:42161594 | 6.40E-279 | dispersed | |
Lac7g1470 | Lac-Chr7:15432577 | Lac8g2407 | Lac-Chr8:42161594 | 1.90E-286 | dispersed | |
Lac1g2141 | Lac-Chr1:42845941 | Lac8g2407 | Lac-Chr8:42161594 | 0.00E+00 | wgd | |
Lac13g0700 | Lac-Chr13:5324893 | Lac8g2407 | Lac-Chr8:42161594 | 0.00E+00 | wgd | |
Lac8g2407 | Lac-Chr8:42161594 | Lac9g2599 | Lac-Chr9:44527799 | 6.10E-193 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2407 | K10775 | - | csv:101206890 | 1239.94 |