Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2412 ATGAATAGGGCTGATTCGGTGATAGAGCCAATGAGGAACCATGAGAAGTACTTAGATTCTCAGCTGTGGCATGCCTGTGCTGGTGGGATGGTTCAATTGCCTTCCATTAACTCAAAGGCAATTTACTTTCCCCAGGGCCATGCCGAGCACGCCCAGGGGAATGTCGATTTTGGGAATGCTCGAATTCCTTCTCTCATTCCTTGCAGGGTATCTGCCATAAGATATCTGGCAGATTCTGAAACGGATGAGGTTTTTACCAAGATAAAGTTGATTCCCCTGAGGAACAATGAATTCAGTTTGGATGATGATGATGAGCTTCTAGGCCGCAACGACATCAGGAGCCAGGAGAAACCTGCCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGCTATTGTGCCGAGACGATCTTTCCTCGCTTGGATTACTCGGCAGAGCCTCCTGTCCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGGACTCCCCGTCGCCATCTTTTGACAACTGGATGGAGCAATTTTGTGAATCAGAAGAAGCTTGTTGCTGGGGACTCGATTGTCTTCCTGAGGGCAGATACTGGTGATCTCTGTGTCGGAATTAGGCGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCACCAGGGTGGAACCCAGCAAATTCAGGCTCTCCACTTGTGGGGTATTCGGATTTTATGAGGGAGAATGATGGCAGATTGGTTAGAAGAAACTCAAATGGGAATCTGAGCGGGAGAGTGAAGGTCGAATCTGTCATCGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGATTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAGGGCCAATACTGTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTCTATCCAGGTTGCTGATCCCATTCGTTGGCCCGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATTCATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCGCGTTTTCCACTTCCAGCAGAAACTGCTGTATTTGGTCATCTTCCAATGCCATCGTTTTCCACCAATTTCTTCGATGCAGCCGCCAACCCGTTACAAAGTATTACTATTACAGCTAACAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCAAACCGCCTTCGGGGCAATTTCTAGCTCCTCTTAAGCACCTTGATGGTGCCAGTCCTCTTCCTAGCATCCGGCCCGAAGATATTTTTGGAGGCACGAAAAACCCTGACAATCTTTCTCACTGGCTAACAATGGGAAATCACATCCAAAGTTCAAAAGAAAGCAAAGAAACAAAACCAGCTCATATCATATTGTTTGGCCAACTCATTCTTCCTAATCAACAGATTTCTAACAGCTCCTCCGGAGATACGACGAATGCATCAGATGTGAATGTAGAGAAAGCATCAAATCTTTCTGATGGTTCTGGTTTATCATCACAGCAGAATGGTTCACTGGAGAATTCATCAGATGGAGGATCTACCTCGTACCACGGTCCAGACAAACCTGGTCTTAGCTTGGATACTGGTCATTGCAAGGTGTTTATGGAGTGGGAGAATGTCGGTCGCACTCTTGATCTATCGGTCCTCAGATCATATGAAGAATTGTACAGAAAGCTGGGCAATATGTTTGGTGTAGGAAGCTCAGAGATGCTGAATTCTGTTCTTTATCAAGATGCACTTGGTGCTACAAAGCATGCTGGAGAAGAGCCTTTCAGTGAGTTTCTGAAGACAGCAAGAAGACTAACCGTACTCGCAGATTCTCGAAGTAGCGACGACATTAGAATGTAG 2067 46.01 MNRADSVIEPMRNHEKYLDSQLWHACAGGMVQLPSINSKAIYFPQGHAEHAQGNVDFGNARIPSLIPCRVSAIRYLADSETDEVFTKIKLIPLRNNEFSLDDDDELLGRNDIRSQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRADTGDLCVGIRRAKRGIGCGIDYSPGWNPANSGSPLVGYSDFMRENDGRLVRRNSNGNLSGRVKVESVIEAAMLAASGKPFEIVYYPCAGTPEFVVRANTVRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISSIQVADPIRWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLPAETAVFGHLPMPSFSTNFFDAAANPLQSITITANNIPAGIQGARHTQFGLSSSNLQISKPPSGQFLAPLKHLDGASPLPSIRPEDIFGGTKNPDNLSHWLTMGNHIQSSKESKETKPAHIILFGQLILPNQQISNSSSGDTTNASDVNVEKASNLSDGSGLSSQQNGSLENSSDGGSTSYHGPDKPGLSLDTGHCKVFMEWENVGRTLDLSVLRSYEELYRKLGNMFGVGSSEMLNSVLYQDALGATKHAGEEPFSEFLKTARRLTVLADSRSSDDIRM 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42232772 42235250 + Lag0029799.1 Lac8g2412 618246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2412 688 SUPERFAMILY DNA-binding pseudobarrel domain 109 223 IPR015300 -
Lac8g2412 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac8g2412 688 Gene3D - 599 684 - -
Lac8g2412 688 SMART B3_2 121 223 IPR003340 GO:0003677(InterPro)
Lac8g2412 688 Pfam Auxin response factor 280 363 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac8g2412 688 MobiDBLite consensus disorder prediction 561 595 - -
Lac8g2412 688 Gene3D - 119 223 IPR015300 -
Lac8g2412 688 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677(InterPro)
Lac8g2412 688 ProSiteProfiles PB1 domain profile. 601 679 IPR053793 -
Lac8g2412 688 MobiDBLite consensus disorder prediction 561 588 - -
Lac8g2412 688 Gene3D - 319 390 - -
Lac8g2412 688 FunFam Auxin response factor 318 391 - -
Lac8g2412 688 CDD B3_DNA 120 221 IPR003340 GO:0003677(InterPro)
Lac8g2412 688 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677(InterPro)
Lac8g2412 688 FunFam Auxin response factor 119 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0864 Lac-Chr6:7584696 Lac8g2412 Lac-Chr8:42232772 2.40E-96 dispersed
Lac8g2412 Lac-Chr8:42232772 Lac9g2568 Lac-Chr9:44277163 3.80E-35 dispersed
Lac1g2132 Lac-Chr1:42764286 Lac8g2412 Lac-Chr8:42232772 5.00E-224 wgd
Lac8g2412 Lac-Chr8:42232772 Lac9g2590 Lac-Chr9:44434178 1.50E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24335 PF02362 B3 3.30E-21 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2412 K14486 - csv:101204568 1137.09