Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2417 ATGGCAATGGCCGTAAGAATCGACAAAGGTACGGAGCAGAGCAATGGCAAGTGGGTGGGCGGTGTGCCCAACTCAGCCGGAGCCGCAGAAAATCACTGCTCCTCTTCTCTTCTTTGCCTTCAATTTCCTCTCATTAAATGCCGCTCTTCGCTCCCCAACTTCGCACCATATTCATTCACAAATCCTCGCCGGAAATTGCATCTCTCTCCTAGGGTTTCGATTTCTCTGTCTGTCTTTATGGCGAAGAATGCGGCGGAGCGCGGCTCGTTCTCGGCGAAGGACTACCAGGATCCGCCACCGGCGCCGCTCATCGACGCCGTGGAGATTACGAAGTGGTCGTTTTACAGAGCTCTGATTGCGGAGTTCATAGCCACTTTACTTTTCCTTTACGTCACTGTGTTGACGGTGATTGGCTACAAATCGCAGACGGATCATATCGGCAACAAGAATGTGGATCCTTGCGGTGGCGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCAGTGACATTTGGGCTGCTGTTGGCCCGTAAAGTGTCACTGGTGCGGGCTGTGATGTACATAGTGGCCCAATGCTTGGGAGCCATAAGCGGAGTTGGGCTCGTGAAGGCCTTCCAGAAGGCCCATTTCCAGAAGCACGGCGGCGGGGCCAATGGGCTCGCCGACGGCTACACCGTCGGCGTCGGACTGGCCGCCGAGATTGTCGGCACGTTTGTGTTGGTGTACACAGTCTTCTCTGCTACTGATCCCAAACGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACTTGGCTACCATTCCCATCACTGGCACTGGAATCAACCCTGCAAGGAGCTTGGGATCTGCTGTTATTTTGAATGACCAAAAGGCTTGGAATAATCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGGTCATTCAGAAGCAACCCACATGTGTGA 1101 51.95 MAMAVRIDKGTEQSNGKWVGGVPNSAGAAENHCSSSLLCLQFPLIKCRSSLPNFAPYSFTNPRRKLHLSPRVSISLSVFMAKNAAERGSFSAKDYQDPPPAPLIDAVEITKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDHIGNKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYIVAQCLGAISGVGLVKAFQKAHFQKHGGGANGLADGYTVGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVILNDQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42264865 42269021 + Lag0029804.1 Lac8g2417 618251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2417 366 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 86 362 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lac8g2417 366 Pfam Major intrinsic protein 108 345 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 CDD MIP 116 348 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 ProSitePatterns MIP family signature. 184 192 IPR022357 -
Lac8g2417 366 SUPERFAMILY Aquaporin-like 108 350 IPR023271 -
Lac8g2417 366 FunFam Probable aquaporin PIP1-2 101 364 - -
Lac8g2417 366 NCBIfam MIP family channel protein 120 345 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 Gene3D Glycerol uptake facilitator protein. 101 366 IPR023271 -
Lac8g2417 366 PRINTS Major intrinsic protein family signature 252 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 PRINTS Major intrinsic protein family signature 328 348 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 PRINTS Major intrinsic protein family signature 166 190 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 PRINTS Major intrinsic protein family signature 203 222 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2417 366 PRINTS Major intrinsic protein family signature 288 310 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1299 Lac-Chr4:31049299 Lac8g2417 Lac-Chr8:42264865 1.30E-119 dispersed
Lac6g2382 Lac-Chr6:41508708 Lac8g2417 Lac-Chr8:42264865 8.90E-24 dispersed
Lac8g2417 Lac-Chr8:42264865 Lac9g1835 Lac-Chr9:38123000 2.90E-114 dispersed
Lac12g1462 Lac-Chr12:26633174 Lac8g2417 Lac-Chr8:42264865 3.60E-19 transposed
Lac13g0709 Lac-Chr13:5432968 Lac8g2417 Lac-Chr8:42264865 8.00E-32 transposed
Lac1g2122 Lac-Chr1:42679618 Lac8g2417 Lac-Chr8:42264865 3.10E-116 wgd
Lac10g3020 Lac-Chr10:44771310 Lac8g2417 Lac-Chr8:42264865 2.20E-117 wgd
Lac13g0708 Lac-Chr13:5428713 Lac8g2417 Lac-Chr8:42264865 1.20E-88 wgd
Lac8g2417 Lac-Chr8:42264865 Lac9g2580 Lac-Chr9:44358020 8.60E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2417 K09872 - csv:101205700 507.294