Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2422 ATGGCTTCCAACACCTTGATGAGCTGCGGCATTGCCACCACCGCCTTCCCTTCTGTCCTGTCTTCCTCCAAGTCTAAATTCGCCGCCGCTGTCCCGATTTCCGGCGTCGCCGTCAATGCCTCCTCGCGCTTCTCCATGTCCGCCGAGTGGATGCCCGGCCAGCCCCGCCCGCCGTACCTCGACGGCTCTGCCCCCGGTGATTTTGGCTTTGACCCTCTTCGGCTGGGAGAAGTGCCAGAGAATCTCGAGAGATTCAAGGAGTCTGAGCTAATCCACTGCAGATGGGCCATGCTTGCTGTTCCAGGAATTTTGGTACCTGAGGCGTTGGGATTGGGCAACTGGGTGAAAGCTCAGGAATGGGCAGCCGTTCCAGGAGGCCAAGCTACCTACTTGGGGCAGCCAGTTCCTTGGGGAACTTTGCCTACCATTTTGGTCATTGAGTTCCTTGCCATTGCCTTTGTAGAGCACCAACGCAGCATGGAAAAAGACCCTGAGAAGAAGAAGTACCCTGGAGGCGCTTTCGACCCATTGGGCTACTCAAAAGACCCTGAAAAGTTGAAGGAATACAAAGTCAAAGAGATCAAAAATGGTCGGTTGGCGCTGTTGGCTTTTGTTGGGTTCTGTGTGCAACAATCGGCATACCCAGGAACAGGGCCATTGGAGAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATTGGCGACATCATCATCCCCAGATCGATTTCGCCTTGA 741 54.66 MASNTLMSCGIATTAFPSVLSSSKSKFAAAVPISGVAVNASSRFSMSAEWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIPRSISP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42322227 42323618 - Lag0029809.1 Lac8g2422 618256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2422 246 FunFam Chlorophyll a-b binding protein, chloroplastic 51 237 - -
Lac8g2422 246 SUPERFAMILY Chlorophyll a-b binding protein 40 240 - -
Lac8g2422 246 Gene3D Chlorophyll a/b binding protein domain 51 237 - -
Lac8g2422 246 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 235 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lac8g2422 246 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3209 Lac-Chr10:46217220 Lac8g2422 Lac-Chr8:42322227 3.30E-38 dispersed
Lac1g1888 Lac-Chr1:40570178 Lac8g2422 Lac-Chr8:42322227 4.40E-40 dispersed
Lac8g1690 Lac-Chr8:34998592 Lac8g2422 Lac-Chr8:42322227 1.20E-21 dispersed
Lac8g2422 Lac-Chr8:42322227 Lac9g2258 Lac-Chr9:41942147 4.60E-31 dispersed
Lac8g2422 Lac-Chr8:42322227 Lac10g0087 Lac-Chr10:677428 5.40E-40 transposed
Lac8g2422 Lac-Chr8:42322227 Lac3g0610 Lac-Chr3:4737376 5.40E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2422 K08907 - csv:101211428 499.975