Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2435 ATGGGTAAGGAGAAGGTTCACATTAACATTGTTGTCATTGGTCATGTCGACTCTGGCAAGTCGACCACCACTGGCCATCTGATCTACAAGCTTGGAGGCATTGACAAGCGTGTTATTGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAAAGATCCTTCAAGTATGCCTGGGTGTTGGACAAGCTGAAGGCTGAACGTGAGCGTGGTATTACCATTGACATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCAGGCCATCGTGACTTCATCAAGAACATGATTACTGGTACTTCCCAGGCCGACTGTGCTGTTCTTATCATTGACTCCACTACCGGAGGTTTTGAAGCTGGTATTTCTAAGGATGGGCAGACCCGTGAACACGCCCTTCTTGCCTTTACCCTTGGTGTAAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACTACCCCCAAGTACTCCAAAGCTAGGTACGATGAAATTGTGAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGCTACAACCCAGACAAAATTCCCTTCGTCCCCATTTCTGGATTTGAGGGTGATAACATGATTGAAAGATCAACCAACCTTGACTGGTACAAGGGCCCAACCCTTCTTGATGCTCTCGACATGATCCAAGAGCCTAAGAGACCATCGGACAAGCCCCTTCGTCTTCCACTTCAGGATGTCTACAAGATCGGAGGTATTGGAACTGTCCCAGTGGGTCGTGTTGAGACTGGTATTCTGAAACCTGGTATGGTCGTCACCTTTGCCCCATCTGGACTGACTACTGAGGTAAAATCTGTTGAGATGCACCACGAAGCTCTTCAAGAAGCTCTTCCTGGTGACAACGTGGGGTTCAACGTGAAGAACGTTGCTGTGAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAATTCCAAGGATGATCCTGCCAAGGAAGCTGCCAGTTTCACCTCTCAAGTTATCATCATGAACCATCCAGGTCAAATCGGAAATGGTTATGCCCCAGTTCTTGACTGCCATACCTCTCATATTGCCGTCAAGTTTTCTGAGATTTTGACCAAGATCGACAGACGATCAGGTAAGGAACTCGAGAAGGAGCCCAAGTTCTTGAAAAATGGTGATGCTGGGTTTGTTAAGATGGTTCCCACTAAGCCCATGGTGGTGGAAACCTTCTCCGAGTATCCCCCACTTGGACGATTTGCTGTGAGGGATATGCGTCAGACTGTGGCTGTTGGTGTCATCAAGGCCGTTGAGAAGAAGGATCCAACCGGTGCGAAGGTCACCAAGTCTGCCGCTAAGAAGTCAGGCAAGTGA 1350 48.22 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDMIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLKNGDAGFVKMVPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKSAAKKSGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42411267 42412782 - Lag0029822.1 Lac8g2435 618269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2435 449 FunFam Elongation factor 1-alpha 323 430 - -
Lac8g2435 449 CDD EF1_alpha 9 227 - -
Lac8g2435 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Lac8g2435 449 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 Gene3D Translation factors 323 430 - -
Lac8g2435 449 Gene3D - 1 226 IPR027417 -
Lac8g2435 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Lac8g2435 449 CDD EF1_alpha_II 230 320 - -
Lac8g2435 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lac8g2435 449 CDD EF1_alpha_III 323 426 - -
Lac8g2435 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Lac8g2435 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Lac8g2435 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Lac8g2435 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Lac8g2435 449 FunFam Elongation factor 1-alpha 229 316 - -
Lac8g2435 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Lac8g2435 449 FunFam Elongation factor 1-alpha 1 226 - -
Lac8g2435 449 Gene3D Translation factors 229 316 - -
Lac8g2435 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Lac8g2435 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Lac8g2435 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0273 Lac-Chr10:2068512 Lac8g2435 Lac-Chr8:42411267 2.50E-69 dispersed
Lac12g2040 Lac-Chr12:37471269 Lac8g2435 Lac-Chr8:42411267 1.10E-253 dispersed
Lac2g0668 Lac-Chr2:5028298 Lac8g2435 Lac-Chr8:42411267 4.50E-78 dispersed
Lac8g0022 Lac-Chr8:511335 Lac8g2435 Lac-Chr8:42411267 6.10E-233 transposed
Lac8g2435 Lac-Chr8:42411267 Lac9g2564 Lac-Chr9:44257201 4.10E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2435 K03231 - rcu:8264976 887.1