Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2437 ATGGGGAAGAGGGGGGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAATTGGAGACAGTGGCATCTGCAGAGCCAGCTCCATTGGATGTGTCTGTTCTACCAATTGAAGAGGTGAAACTAGCTGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTCGCCATTGCCACTGCAGTTGCTGCCGAGGCGGCCGTTGCAGCGGCTCAGGCTGCGGCCGAGGTCGTTCGGCTCACTACCATCCCTCGGTACTCTGGAAAATCAAAGGAAGAAATAGCAGCTATCAAGATCCAAACTGCATTTCGTGGCTATATGGCAAGAAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAATCATTGATACAAGGCCAATCTGTTAAAAGACAAGCAACAACCACATTAAGATGCATGCAGACTCTTGCTCGAGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTGTTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACCCTACATTCATGGACCCGAACAATCCACACTGGGGCTGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAGACTAAGAGCACCGTCGATTATCACGATCGCGGCTCCGTCAAGAGCGCGATCAGCCATGCAACTTCAATCGGAGACATTGCCAAAGCTTACTCCCGTCGTGATCTCAATCTCGACATCAAGCCTTTTCCAAGAACTCCGACGAGCCAAAAAACGAGCCGAGCTCCAAGTCGCCAATCGCCGGCGACTCCTACGAAAGCGCAATCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGCGAGTCCAAGAGGATTCGGCTGGGGCGGAGACGACGATTCCAGAAGCGCATTGAGCGTCAAATCGGAGCGGTACCGACGACACAGCATCGCCGGATCATCGGTGAGGGACGACGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCGTCCACAGAAGCAGCAAGGGCTAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAAACGGCGGCGACTCCGGAAAAGGGACCGGCCAGTGGCGGCGTAAAGAAGCGGCTCTCGTTCCCCGCCTCGCCGGCGACGGCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACGCTAGCCCGATCAAGAACGTTGCAGAGAGAGATTTTACCGGCGAGAGCAGATAG 1458 51.58 MGKRGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVASAEPAPLDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTVSANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYSHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWETKSTVDYHDRGSVKSAISHATSIGDIAKAYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAQSSLSAGRKLKPASPRGFGWGGDDDSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAATPEKGPASGGVKKRLSFPASPATARRHSGPPKVDASPIKNVAERDFTGESR 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42431493 42434585 + Lag0029824.1 Lac8g2437 618271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2437 485 PANTHER IQ-DOMAIN 5-RELATED 6 435 - -
Lac8g2437 485 MobiDBLite consensus disorder prediction 395 411 - -
Lac8g2437 485 Coils Coil 177 197 - -
Lac8g2437 485 Gene3D iswi atpase 111 149 - -
Lac8g2437 485 MobiDBLite consensus disorder prediction 376 394 - -
Lac8g2437 485 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Lac8g2437 485 ProSiteProfiles IQ motif profile. 114 142 - -
Lac8g2437 485 MobiDBLite consensus disorder prediction 319 485 - -
Lac8g2437 485 MobiDBLite consensus disorder prediction 1 35 - -
Lac8g2437 485 MobiDBLite consensus disorder prediction 324 356 - -
Lac8g2437 485 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2437 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0159 Lac-Chr11:1473226 Lac8g2437 Lac-Chr8:42431493 2.00E-14 dispersed
Lac12g1344 Lac-Chr12:21464418 Lac8g2437 Lac-Chr8:42431493 4.80E-27 dispersed
Lac4g1827 Lac-Chr4:37414795 Lac8g2437 Lac-Chr8:42431493 8.50E-30 dispersed
Lac5g2434 Lac-Chr5:42959095 Lac8g2437 Lac-Chr8:42431493 5.50E-27 dispersed
Lac5g3047 Lac-Chr5:48347472 Lac8g2437 Lac-Chr8:42431493 2.50E-22 dispersed
Lac7g0055 Lac-Chr7:491852 Lac8g2437 Lac-Chr8:42431493 4.60E-38 dispersed
Lac7g0706 Lac-Chr7:5672673 Lac8g2437 Lac-Chr8:42431493 7.80E-18 dispersed
Lac7g1342 Lac-Chr7:13073072 Lac8g2437 Lac-Chr8:42431493 1.60E-23 dispersed
Lac8g2437 Lac-Chr8:42431493 Lac10g0366 Lac-Chr10:2856021 1.30E-10 dispersed
Lac12g0517 Lac-Chr12:5594763 Lac8g2437 Lac-Chr8:42431493 3.90E-16 transposed
Lac1g3383 Lac-Chr1:53405612 Lac8g2437 Lac-Chr8:42431493 1.20E-33 transposed
Lac8g2087 Lac-Chr8:39343750 Lac8g2437 Lac-Chr8:42431493 5.70E-30 transposed
Lac1g2108 Lac-Chr1:42564758 Lac8g2437 Lac-Chr8:42431493 1.50E-105 wgd
Lac10g3038 Lac-Chr10:44910783 Lac8g2437 Lac-Chr8:42431493 4.50E-79 wgd
Lac13g0726 Lac-Chr13:5609100 Lac8g2437 Lac-Chr8:42431493 2.80E-114 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40