Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2474 ATGGAGATTTCATACGCATCACCTAGCGCAACGAGTATTGCTTCCTCTAATTCTGCCCTTTCCGCCATGCCTGGCTCGACCCGACCGGTCAAGGTCATTCCCTTGCAGCACCCCAGTACGACGTCGTCCTCGCCGGCCGGTGGTTCTCACGCCGGCGCGCTGGTGAAGACATGGACGGCGAAGGTTAAGCGGATGACTTGGATTCACTGGATGGAGCTTCTGATACCTTGCTCACGTTGGATTAGGACGTATAAATGGCGGGAGTATTTACAGAGCGATCTCTTGTCCGGGATTACTATTGGCATCATGCTCGTTCCGCAGGCAATGTCTTATGCAAAATTGGCCGGGCTTCAACCAATATATGGACTTTATTCTGGTTTTCTCCCTTTGTTCGTCTATGCAATTTTTGGTTCCTCTCGTCAGCTTGCAGTTGGTCCAGTAGCATTGGTTTCTCTCCTGGTTTCTAATGTCTTGGGTGGAATTGTCAATTCATCTGAGGAACTATATACGGAACTTGCGATATTATTGGCACTCATGGTTGGGATATTGGAATGTGTGATGGGGCTCTTGAGGCTTGGATGGCTTATTCGCTTTATCAGTCACTCTGTAATCTCTGGCTTTACTACAGCTTCTGCCATTGTGATTGGATTATCCCAAGTGAAATACTTTCTAGGGTACAATGTATCAAGAAGTAGCAAAATTATACCTCTAATAGAGAGCATAGTAGCGGGAGCAGACGGGTTCTTATGGGCTCCTTTCATAATGGGATCAATCATCCTTGCAATACTTCAAATCATGAAGCATTTGGGAAAAACAAGGAAGCACTTACGATTTCTCAGAGTTGCTGGTCCCCTTACAGCAGTTGTTATGGGCACAACTTTGGTGAAAGTATTGAATCTACCTTCCATTTCTTTGGTTGGAGACATTCCCCAAGGCCTTCCAAAGTTTTCTGTTCCTAAAAGGTTCGAGCATGTGAAGTCATTGATTCCAACTGCCTTTCTGATCACAGGAGTGGCTATATTGGAATCTGTTGGTATTGCAAAAGCATTAGCAGCCAAGAATGGTTATGAGTTAGATTCAAATCAGGAGTTATTTGGTCTTGGAGTAGCTAATGTTGTTGGCTCATTTTTTTCAGCATATCCCACAACAGGTTCTTTCTCGAGATCAGCTGTGAATCACGAAAGTGGAGCAAAAACTAGCTTATCTCAGATTGTTACAGGAATCATTATGGGCGGTGCCCTTCTTTTCTTGACTCCATTGTTTGAGCACATACCTCAGTGTGCTTTGGCTGCCATTGTGATCTCTGCTGTAATAACTTTGGTGGATTATGATGAGGCTATTTTCTTGTGGCATATAGATAAGAAAGATTTTCTTCTTTGGGTGATTACTGCCATTGCTACATTGTTCCTTGGTATTGAGATTGGTGTCTTAATTGGGGTGGGTGTTTCACTGGTCTTTGTCATTCACGAATCTGCAAATCCACATATGGCTGTATTGGGGCGTCTTCCTGGCACCACTGTGTATAGAAATATTCAACAATATCCTGAGGCATATACTTACAATGGAATGGTGATTGTGCGGATTGATGCACCAATCTATTTTGCAAACACGAGTTACATCAAAGATAGGTTACGTGAATATGAAGTTGAAGTGGATCGATCAACTGGTCGTGGGCCAGATGTTGAAAGAGTCTATTTTGTGATTATAGAGATGGCACCGGTTACTTATATAGATTCAAGTGCTGTCCAAGCTCTAAAAGATTTGTATCAAGAATACAAACTTCGAGATATTCAGATTGCCATTTCAAATCCAAATCGAGATGTTTTGCTTACATTTTCAAGATCCGGCGTCGTTGAACTTATTGGCAAGGAATGGTTTTTTGTACGAGTTCATGATGCAGTTCAAGTTTGTCTTCAGCATGTGGAGAGCTTAAAGGAAACAACCATGATTGCACGTTCTTCACTAAAAGATGCATCAAGCTTTCTCCAAAGGTTAGTGGATTCTAGAAGTGAAGATCAATCGGTGAGTCAATTAGAATCAGGCTTCCAAAAGCTTCCAAGTTCCAATGAAATCGACCCTCAATTGGAGCCATTACTGTCTCCAAATCCTTGA 2112 42.76 MEISYASPSATSIASSNSALSAMPGSTRPVKVIPLQHPSTTSSSPAGGSHAGALVKTWTAKVKRMTWIHWMELLIPCSRWIRTYKWREYLQSDLLSGITIGIMLVPQAMSYAKLAGLQPIYGLYSGFLPLFVYAIFGSSRQLAVGPVALVSLLVSNVLGGIVNSSEELYTELAILLALMVGILECVMGLLRLGWLIRFISHSVISGFTTASAIVIGLSQVKYFLGYNVSRSSKIIPLIESIVAGADGFLWAPFIMGSIILAILQIMKHLGKTRKHLRFLRVAGPLTAVVMGTTLVKVLNLPSISLVGDIPQGLPKFSVPKRFEHVKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANVVGSFFSAYPTTGSFSRSAVNHESGAKTSLSQIVTGIIMGGALLFLTPLFEHIPQCALAAIVISAVITLVDYDEAIFLWHIDKKDFLLWVITAIATLFLGIEIGVLIGVGVSLVFVIHESANPHMAVLGRLPGTTVYRNIQQYPEAYTYNGMVIVRIDAPIYFANTSYIKDRLREYEVEVDRSTGRGPDVERVYFVIIEMAPVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNRDVLLTFSRSGVVELIGKEWFFVRVHDAVQVCLQHVESLKETTMIARSSLKDASSFLQRLVDSRSEDQSVSQLESGFQKLPSSNEIDPQLEPLLSPNP 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42657755 42669254 + Lag0029861.1 Lac8g2474 618308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2474 703 ProSiteProfiles STAS domain profile. 513 637 IPR002645 -
Lac8g2474 703 Pfam STAS domain 514 633 IPR002645 -
Lac8g2474 703 MobiDBLite consensus disorder prediction 670 703 - -
Lac8g2474 703 ProSitePatterns SLC26A transporters signature. 119 140 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Lac8g2474 703 Pfam Sulfate permease family 90 463 IPR011547 GO:0016020(InterPro)
Lac8g2474 703 Gene3D STAS domain 493 641 IPR036513 -
Lac8g2474 703 SUPERFAMILY SpoIIaa-like 515 637 IPR036513 -
Lac8g2474 703 CDD STAS_SulP_like_sulfate_transporter 514 630 - -
Lac8g2474 703 PANTHER SULFATE TRANSPORTER 62 639 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2474 703 FunFam Sulfate transporter 31 493 640 - -
Lac8g2474 703 MobiDBLite consensus disorder prediction 670 695 - -
Lac8g2474 703 NCBIfam sulfate permease 76 633 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1915 Lac-Chr8:37413485 Lac8g2474 Lac-Chr8:42657755 2.20E-109 dispersed
Lac8g1916 Lac-Chr8:37470810 Lac8g2474 Lac-Chr8:42657755 7.20E-79 dispersed
Lac8g2474 Lac-Chr8:42657755 Lac2g0871 Lac-Chr2:6864122 5.90E-108 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2474 K18059 - csv:101202870 1216.06