Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2480 | ATGCCAATTCACAAATTCACACTCGGATCACCGGGAGAGGCGAGCCAACCAGACGCGATAAAGGCTGCATTTGCCGAATTCTTCTCCATGATCATATTTGTTTTCGCCGGACAAGGATCCGGTTTGGCTTTCAATAAGTTAACGGAAGGTGGATCTGCGACACCGTCGGGGCTGATAGTCGCAGCTCTGGCTCACGCTTTTGCGTTGATTGTGGCGGTCTCCGTCGGAGCCAATATCTCCGGCGGCCATGTGAATCCGGCAGTTACATTTGGTGCACTTGTTGGTGGAAACTTATCGTTCTTTAGAAGTATATTGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTACTTAAGTTTGCGACCGGTGGACAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTATGGAATGCATTTATATTCGAGGCAGTGATGACTTTTGGATTAGTGTACACAGTCTATGCAACAGCCATGGATCCAAAGAAGGAGAATTTGGGCATAATTGCTCCAATTGCTATTGGTTTCATTGTTGGTGCCAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTGGTCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCAGCCATTGTCTATGACACCATCTTTATCTGTGAGTCCACGCATGATCCTCTTACTCAGTACAGTGACTTTTAG | 762 | 48.43 | MPIHKFTLGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFNKLTEGGSATPSGLIVAALAHAFALIVAVSVGANISGGHVNPAVTFGALVGGNLSFFRSILYWIAQLLGSVVACFLLKFATGGQVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAMDPKKENLGIIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWLGPMAGAAIAAIVYDTIFICESTHDPLTQYSDF | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42714981 | 42717587 | + | Lag0029867.1 | Lac8g2480 | 618314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2480 | 253 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | Pfam | Major intrinsic protein | 14 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | SUPERFAMILY | Aquaporin-like | 16 | 248 | IPR023271 | - | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac8g2480 | 253 | PANTHER | AQUAPORIN-8 | 6 | 242 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
Lac8g2480 | 253 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
Lac8g2480 | 253 | FunFam | Probable aquaporin TIP1-1 | 4 | 251 | - | - | |
Lac8g2480 | 253 | Gene3D | Glycerol uptake facilitator protein. | 5 | 251 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2185 | Lac-Chr1:43310071 | Lac8g2480 | Lac-Chr8:42714981 | 5.00E-94 | dispersed | |
Lac6g1097 | Lac-Chr6:10180397 | Lac8g2480 | Lac-Chr8:42714981 | 7.70E-63 | dispersed | |
Lac8g2480 | Lac-Chr8:42714981 | Lac9g2580 | Lac-Chr9:44358020 | 7.70E-26 | dispersed | |
Lac8g2480 | Lac-Chr8:42714981 | Lac4g2901 | Lac-Chr4:47447596 | 2.10E-71 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2480 | K09873 | - | csv:101222909 | 457.218 |