Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2480 ATGCCAATTCACAAATTCACACTCGGATCACCGGGAGAGGCGAGCCAACCAGACGCGATAAAGGCTGCATTTGCCGAATTCTTCTCCATGATCATATTTGTTTTCGCCGGACAAGGATCCGGTTTGGCTTTCAATAAGTTAACGGAAGGTGGATCTGCGACACCGTCGGGGCTGATAGTCGCAGCTCTGGCTCACGCTTTTGCGTTGATTGTGGCGGTCTCCGTCGGAGCCAATATCTCCGGCGGCCATGTGAATCCGGCAGTTACATTTGGTGCACTTGTTGGTGGAAACTTATCGTTCTTTAGAAGTATATTGTATTGGATCGCTCAATTGCTTGGCTCTGTTGTTGCGTGCTTCCTACTTAAGTTTGCGACCGGTGGACAGGTAACACCAGCATTTGCCCTGTCATCAGGAGTTTCTGTATGGAATGCATTTATATTCGAGGCAGTGATGACTTTTGGATTAGTGTACACAGTCTATGCAACAGCCATGGATCCAAAGAAGGAGAATTTGGGCATAATTGCTCCAATTGCTATTGGTTTCATTGTTGGTGCCAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTGGTCACCTGGTCATGGACCCATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCAGCCATTGCAGCCATTGTCTATGACACCATCTTTATCTGTGAGTCCACGCATGATCCTCTTACTCAGTACAGTGACTTTTAG 762 48.43 MPIHKFTLGSPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFNKLTEGGSATPSGLIVAALAHAFALIVAVSVGANISGGHVNPAVTFGALVGGNLSFFRSILYWIAQLLGSVVACFLLKFATGGQVTPAFALSSGVSVWNAFIFEAVMTFGLVYTVYATAMDPKKENLGIIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVTWSWTHHWVYWLGPMAGAAIAAIVYDTIFICESTHDPLTQYSDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42714981 42717587 + Lag0029867.1 Lac8g2480 618314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2480 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 SUPERFAMILY Aquaporin-like 16 248 IPR023271 -
Lac8g2480 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2480 253 PANTHER AQUAPORIN-8 6 242 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Lac8g2480 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lac8g2480 253 FunFam Probable aquaporin TIP1-1 4 251 - -
Lac8g2480 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2185 Lac-Chr1:43310071 Lac8g2480 Lac-Chr8:42714981 5.00E-94 dispersed
Lac6g1097 Lac-Chr6:10180397 Lac8g2480 Lac-Chr8:42714981 7.70E-63 dispersed
Lac8g2480 Lac-Chr8:42714981 Lac9g2580 Lac-Chr9:44358020 7.70E-26 dispersed
Lac8g2480 Lac-Chr8:42714981 Lac4g2901 Lac-Chr4:47447596 2.10E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2480 K09873 - csv:101222909 457.218