Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2482 | ATGGAGCATCCCGCCGGAATGTTGGTTCAGGCGAGGCCATTTGTTGCCGTGATTCTTCAGCAGTTCATCACTGCCGGAATGGCCATCATTTCCAAGTTTGCTCTCAACCAGGGACTCAACCAGCACGTTTTAGTCGTCTACCGTTACGCCATTGCCACCGTCGCCATTGCTCCTTTCGCTCTCGTCTTCGAAAGGAAAGTGAGACCGAAGATGACTTGGTCCGTTTTCGGGAAGATCGTGTTGCTGGGACTATTGGAACCTGCACTCGATCAGAACTTGTATTACACGGGCATGAAGTTCACTACGGCAACTTTCGCGTCTGCTATGACCAATATGACTCCTGGCCTTGTCTTCCTCATGGCTTGGATTGTCAGGCTCGAGAAGGTTAACATAAGGCAGTTGCCAAGCCAGGCAAAGATATTAGGGACAGTGGTGGCAGTGGGAGGGGCAATGATAATGACTATGGTAAGAGGGCCAATCTTGAAGCTGCCATGGACAAATCACAACCTCAATCACTCTACTGCAACTGCAGCTAACCAGCAAGATTTTGTCAAGGGTGCTCTCATGATCTCTACAGGCTGTATTTTATGGTCTGCTTTTACTGTTCTTCAGGCAATTACAGTAAAATTGTACCCTGCACAACTCTCCTTAACAGCTTGTATATGCTTCACGGGCGCCGTGCAAGCCTCGGTGATAGCTTTCGCAATGGAAGGGCACAGACCTGCTGCCTGGTCATTACATTTAGATTCCACCCTCATAGCTCCTTTATACAGTGGAATCATGTCTTCGGGGGTTTCATATACTATTCAAGCAGCGATAATGCAAACGAAAGGGCCAGTTTTTGCAACTACATTTAGTCCCCTGAGTATGGTCATTGTTGCAATCATTAGTTCATTTGCATTATCCGAGATATTATACTTCGGAAGGGTTATTGGAGCAGCTGTAATTATTACAGGTCTTTATTTAGTTCTGTGGGGTAAAATCAAGGATCAGGCTCCATACAATTCAGATAGTGAGAAGATGACCCCACCAGATCAGAAACTGACTGCCATAACTGAAAAACCTAAGACTTCAGATAAAGAACTAGTAGTTGATCTGGCTAGAATAAAAACAGTGGATGATTCTGTTTGA | 1131 | 45.62 | MEHPAGMLVQARPFVAVILQQFITAGMAIISKFALNQGLNQHVLVVYRYAIATVAIAPFALVFERKVRPKMTWSVFGKIVLLGLLEPALDQNLYYTGMKFTTATFASAMTNMTPGLVFLMAWIVRLEKVNIRQLPSQAKILGTVVAVGGAMIMTMVRGPILKLPWTNHNLNHSTATAANQQDFVKGALMISTGCILWSAFTVLQAITVKLYPAQLSLTACICFTGAVQASVIAFAMEGHRPAAWSLHLDSTLIAPLYSGIMSSGVSYTIQAAIMQTKGPVFATTFSPLSMVIVAIISSFALSEILYFGRVIGAAVIITGLYLVLWGKIKDQAPYNSDSEKMTPPDQKLTAITEKPKTSDKELVVDLARIKTVDDSV | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42723977 | 42726482 | - | Lag0029869.1 | Lac8g2482 | 618316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2482 | 376 | PANTHER | WAT1-RELATED PROTEIN | 15 | 337 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| Lac8g2482 | 376 | Pfam | EamA-like transporter family | 16 | 154 | IPR000620 | GO:0016020(InterPro) | |
| Lac8g2482 | 376 | Pfam | EamA-like transporter family | 185 | 324 | IPR000620 | GO:0016020(InterPro) | |
| Lac8g2482 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 47 | 155 | - | - | |
| Lac8g2482 | 376 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 249 | 328 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g2287 | Lac-Chr11:38947001 | Lac8g2482 | Lac-Chr8:42723977 | 1.40E-30 | dispersed | |
| Lac13g0966 | Lac-Chr13:8030057 | Lac8g2482 | Lac-Chr8:42723977 | 2.70E-26 | dispersed | |
| Lac13g0972 | Lac-Chr13:8078859 | Lac8g2482 | Lac-Chr8:42723977 | 2.90E-94 | dispersed | |
| Lac1g2062 | Lac-Chr1:42153373 | Lac8g2482 | Lac-Chr8:42723977 | 4.00E-103 | dispersed | |
| Lac6g1663 | Lac-Chr6:24501312 | Lac8g2482 | Lac-Chr8:42723977 | 4.90E-22 | dispersed | |
| Lac8g1859 | Lac-Chr8:36862403 | Lac8g2482 | Lac-Chr8:42723977 | 6.30E-72 | dispersed | |
| Lac8g1860 | Lac-Chr8:36871754 | Lac8g2482 | Lac-Chr8:42723977 | 9.00E-84 | dispersed | |
| Lac8g2482 | Lac-Chr8:42723977 | Lac8g2486 | Lac-Chr8:42795169 | 4.10E-108 | dispersed | |
| Lac8g2482 | Lac-Chr8:42723977 | Lac8g2484 | Lac-Chr8:42751522 | 1.20E-75 | proximal | |
| Lac13g0963 | Lac-Chr13:7988948 | Lac8g2482 | Lac-Chr8:42723977 | 3.00E-106 | wgd |
Pathway information