Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2485 ATGGATCAGAGAAGTGAAATGTTGAAGAAGGCAAAGCCATACTTAGGAGTGATTGCATTAAGATTTGGTTCAGCTGGAATGTCTATAATTTCAAAGGCTGCTCTAAACCAAGGAATGAATCAACTTGTCACCATTGTTTATCGTTACTTTATTGGTGCCATTCTTGTTGCTCCTTTTGCCCTTCTCTTAGACAGGAAAATAAGACTCAAAATGACTCGCTCGATCTTCGCCAAGATTCTTCTGTTGGGCTTACTCGAGTCTGTGCTAGCCCAAAGTTTGATTTACTCTGGTACTAAATACACAAGTGCAACTTTTGCAACTGCTATGTGCAATATTCTTCCTGCCTTTGCATTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGCACTTTGGTTACTGTAGGAGGAGCAATGATGATGGCTCTTATAAAAGGACCCATGTTGAGTTTGCCTTGGACCAAAGAGAACCACAATCTTCACACTTATTCTAGCCTTGGAAACAAGCAAGAACAAGTTAAGGCTGCCATTCTTATCACCATTTCAAGTATCTGTTCCTCTGCCTTCACCATTCTTCTGGCACATACAATAAGATCATACCCAGCTGAGTTCACACTAACTACTTTCATATGCTTGGCTGGAGCTGTGGAAAGCTCTATTCTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCTGATTCCATACTCTTAGCTGCTCTCTATGGTGGAATAATATCTTCTGGGATCACCTATTACATCCAAGGAGTGGTGATGAAGTTAAAAGGGCCTGTTTTTGTAACTGCCTTCAATCCTCTCAGCATGGTCATAGTTGCAATTATTAGCTCATTCATATTCGCCGAGACACTACGTTTGGGAAGGGTTGTTGGAGCATGTGTCATAATTATAGGTCTTTATTTGGTTCTTTGGGGAAAGAGCAAAGATGAGCCTCCATTCAAAGTGGGCAGTGATGACTTACCAACTTCACATCAAAACTCAGCTGCCAAAAGCCACCATCTTAATAAGCTTTCAGATCAACATCTCAAAGCTGCTGAACCAACAACACTTGGTGATTCTTCCAGTGTTTGA 1137 40.99 MDQRSEMLKKAKPYLGVIALRFGSAGMSIISKAALNQGMNQLVTIVYRYFIGAILVAPFALLLDRKIRLKMTRSIFAKILLLGLLESVLAQSLIYSGTKYTSATFATAMCNILPAFAFLMAWICRMEKVNIRRLRSQAKILGTLVTVGGAMMMALIKGPMLSLPWTKENHNLHTYSSLGNKQEQVKAAILITISSICSSAFTILLAHTIRSYPAEFTLTTFICLAGAVESSILALAFEWNNPAAWALHADSILLAALYGGIISSGITYYIQGVVMKLKGPVFVTAFNPLSMVIVAIISSFIFAETLRLGRVVGACVIIIGLYLVLWGKSKDEPPFKVGSDDLPTSHQNSAAKSHHLNKLSDQHLKAAEPTTLGDSSSV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42772346 42775321 - Lag0029872.1 Lac8g2485 618319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2485 378 MobiDBLite consensus disorder prediction 337 378 - -
Lac8g2485 378 MobiDBLite consensus disorder prediction 341 355 - -
Lac8g2485 378 PANTHER WAT1-RELATED PROTEIN 17 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac8g2485 378 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020(InterPro)
Lac8g2485 378 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020(InterPro)
Lac8g2485 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Lac8g2485 378 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2485 Lac-Chr8:42772346 Lac8g2609 Lac-Chr8:43701185 1.00E-42 dispersed
Lac8g2484 Lac-Chr8:42751522 Lac8g2485 Lac-Chr8:42772346 3.40E-77 tandem
Lac8g2485 Lac-Chr8:42772346 Lac8g2486 Lac-Chr8:42795169 2.80E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2485 - - - 0.0