Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2486 ATGGAACATGCAGGACATATGTTTGAGAAGGCAAAGCCATATTTGGGAGTAATTGCACTAAGATTTGCTTCTGCAGGAATGTCTATTATCTCTAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACACAATTGGAGCCATTGTTGTTGCTCCTTTTGCCTTTGTCTTAGACAGGAAAATAAGGCCAAAGATGACTCTTCGGATTTTCGCCAAGATTCTTCTACTAGGTTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACTCTGGTACTAAATACACAACTGCAACTTTTGCAACTGCCATGTGCAATATTCTTCCTGCCTTTGCGTTTCTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATATTAAAAGTATACGAAGCCAGGCAAAGATTTTAGGCACTTTAGTTACAGTAGGAGGAGCAATGATGATGGCTCTTATAAAAGGACCCATGTTGAGTTTGCCTTGGACCAAAGAGAATTTCAACCCTCACTCTTATTCTAACATTGCAAATAAGCAAGAACCTGTTAAGGCTGCCATTGTTATCACCATTTCAAGTATCTGCTCCTCTGGCTTCACCATTCTTCTGGCACATACAATAAGATTATACCCAGCTGAGCTCACACTAACTACTTTCATATGCTTGGCTGGAGCCGTGGAAAGCTCTATTCTAGCTTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCCTTACATGCTGATTCCATACTCTTAGCTGCTCTCTATGGTGGCATAGTATCTTCTGGGATTGCCTATTATCTCCAAGGAGTTGTGGTGAAGTTAAAAGGACCTGTGTTTGTTACTGCATTTAATCCTCTTAGCATGGTGATAGTTGCTGTGATTAGTTCATTCATATTCGCTGAAAGGCTGCGCCTAGGAAGGGTCATTGGAGCAGCTGTGATAATTGTAGGCCTTTACATGGTTCTGTGGGGCAAGAGCAAAGATCAGCTTCCATTCAAAGTGAGGAATGATGAATTACCAACCTCAAACCAAAACTCAACTACCACAAACCAGCAGCTGAAGCCCTCAGATCAACAACTCAAAGCTGCAGCCCCAACAACACTAAGCAACAATTCCACTGCTTGA 1134 41.98 MEHAGHMFEKAKPYLGVIALRFASAGMSIISKAALNQGMNQLVTIVYRYTIGAIVVAPFAFVLDRKIRPKMTLRIFAKILLLGLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFLMAWICRMEKVNIKSIRSQAKILGTLVTVGGAMMMALIKGPMLSLPWTKENFNPHSYSNIANKQEPVKAAIVITISSICSSGFTILLAHTIRLYPAELTLTTFICLAGAVESSILALAFEWNNPAAWALHADSILLAALYGGIVSSGIAYYLQGVVVKLKGPVFVTAFNPLSMVIVAVISSFIFAERLRLGRVIGAAVIIVGLYMVLWGKSKDQLPFKVRNDELPTSNQNSTTTNQQLKPSDQQLKAAAPTTLSNNSTA 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42795169 42797546 - Lag0029873.1 Lac8g2486 618320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2486 377 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020(InterPro)
Lac8g2486 377 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020(InterPro)
Lac8g2486 377 MobiDBLite consensus disorder prediction 339 377 - -
Lac8g2486 377 PANTHER WAT1-RELATED PROTEIN 17 345 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Lac8g2486 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 235 330 - -
Lac8g2486 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1496 Lac-Chr3:13729475 Lac8g2486 Lac-Chr8:42795169 3.20E-61 dispersed
Lac5g0607 Lac-Chr5:6938385 Lac8g2486 Lac-Chr8:42795169 1.90E-10 dispersed
Lac6g2165 Lac-Chr6:37951005 Lac8g2486 Lac-Chr8:42795169 2.40E-74 dispersed
Lac8g2482 Lac-Chr8:42723977 Lac8g2486 Lac-Chr8:42795169 4.10E-108 dispersed
Lac8g2484 Lac-Chr8:42751522 Lac8g2486 Lac-Chr8:42795169 2.90E-76 dispersed
Lac8g2486 Lac-Chr8:42795169 Lac8g2609 Lac-Chr8:43701185 1.00E-42 dispersed
Lac8g2485 Lac-Chr8:42772346 Lac8g2486 Lac-Chr8:42795169 2.80E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2486 - - - 0.0