Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2506 ATGGCGGGAAAGGGCGAGGGTCCGGCCATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAGCACGATCGTGTTGAGATCATTGCCAATGATCAGGGGAATCGGACGACGCCGTCCTATGTGGCTTTCACTGACAGCGAGCGGCTCATCGGCGATGCTGCCAAGAACCAAGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCACCGACCCCTCGGTGCAGAGCGATGTGAAATTATGGCCGTTCAAGGTCATCCCCGGTCCAGGTGACAAACCCATGATCGTCGTCAACTACAAAGGCGAAGAGAAGCAGTTCGCCGCTGAGGAAATCTCTTCCATGGTCCTCACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTTCGTCCGTGAAGAACGCCGTCGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACAAAAGATGCTGGTGTCATTGCCGGTCTCAATGTCATGCGGATCATCAATGAGCCTACAGCCGCAGCTATCGCTTATGGACTCGACAAAAAGGCAACCAGTGTCGGCGAGAAGAATGTACTGATATTTGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACAGCCGGTGACACCCATCTCGGAGGCGAGGACTTCGACAACAGATTGGTTAACCATTTCGTTCAGGAATTCAAGAGAAAGCACAAGAAGGACATCAGTGGAAATCCGAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGGGCCAAGAGGACGCTTTCATCCACTGCCCAAACTACAATCGAGATTGATTCTTTGTATGAGGGAATTGATTTCTACACAACCATCACTCGTGCTAGATTCGAGGAGCTCAACATGGACTTGTTCCGAAAGTGTATGGAGCCAGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCACCGTCCATGATGTTGTCCTTGTTGGTGGCTCTACAAGGATTCCTAAGGTGCAGCAGCTATTGCAGGATTTCTTCAATGGCAAAGAACTCTGCAAAAGTATCAATCCTGATGAGGCAGTTGCTTATGGGGCTGCTGTCCAAGCTGCGATCTTGAGTGGTGAAGGAAATGAGAAAGTGCAGGATCTTCTTCTTTTGGATGTTACTCCTCTGTCTCTTGGTTTGGAAACTGCAGGAGGTGTGATGACAGTTTTGATTCCAAGGAATACCACCATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTCATTCAAGTCTACGAGGGTGAAAGGACAAGAACCAGAGATAACAACTTGTTGGGCAAGTTTGAACTTTCCGGCATCCCTCCGGCTCCAAGAGGTGTTCCACAGATCACTGTCTGCTTTGACATTGACGCCAACGGTATTCTAAACGTTTCTGCAGAGGACAAGACCACCGGACAGAAGAATAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAGGAGATTGAGAAACTGGTTCAGGAAGCAGAGAAGTTCAAGGCCGAAGATGAGGAACACAAGAAGAAAGTTGAATCAAAGAACGCTTTAGAGAACTATGCATACAACATGAGGAACACCATCAGGGATGAAAAGATCAGTGGTAAACTTGCGCCAGCAGATAAGAAGAAGATTGAAGATGCAGTCGAACAGGCCATCCAGTGGCTAGACAGCAACCAGCTCGCTGAGTCAGATGAATTTGAAGACAAGATGAAGGAACTTGAATCTATCTGCAACCCCATCATAGCCAAGATGTATCAAGGTGGTGCTGACATGGGCGGCAGCGGAATGGATGATGATGCTCCTCCTTCTGGCGGCAGCGGTGCTGGTCCTAAGATTGAAGAAGTTGATTAA 1947 48.38 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFTDPSVQSDVKLWPFKVIPGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKISGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGSGMDDDAPPSGGSGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42909906 42912316 - Lag0029893.1 Lac8g2506 618340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2506 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Lac8g2506 648 FunFam Heat shock 70 kDa protein 197 260 - -
Lac8g2506 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Lac8g2506 648 FunFam Heat shock 70 kDa protein 71 126 - -
Lac8g2506 648 Gene3D - 10 384 - -
Lac8g2506 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Lac8g2506 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Lac8g2506 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Lac8g2506 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Lac8g2506 648 Gene3D - 546 619 IPR029048 -
Lac8g2506 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Lac8g2506 648 FunFam Heat shock 70 kDa 391 545 - -
Lac8g2506 648 MobiDBLite consensus disorder prediction 619 648 - -
Lac8g2506 648 FunFam Heat shock 70 kDa protein 539 648 - -
Lac8g2506 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Lac8g2506 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Lac8g2506 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Lac8g2506 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Lac8g2506 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Lac8g2506 648 FunFam Heat shock 70 kDa 235 318 - -
Lac8g2506 648 Gene3D - 71 126 - -
Lac8g2506 648 Coils Coil 514 541 - -
Lac8g2506 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Lac8g2506 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Lac8g2506 648 Gene3D - 192 366 - -
Lac8g2506 648 FunFam Heat shock protein 70 10 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2731 Lac-Chr4:46236183 Lac8g2506 Lac-Chr8:42909906 0.00E+00 dispersed
Lac4g2734 Lac-Chr4:46245067 Lac8g2506 Lac-Chr8:42909906 1.00E-16 dispersed
Lac8g2498 Lac-Chr8:42879624 Lac8g2506 Lac-Chr8:42909906 0.00E+00 proximal
Lac11g1979 Lac-Chr11:35319161 Lac8g2506 Lac-Chr8:42909906 1.70E-229 transposed
Lac2g1894 Lac-Chr2:19766686 Lac8g2506 Lac-Chr8:42909906 2.80E-23 transposed
Lac3g0230 Lac-Chr3:1615866 Lac8g2506 Lac-Chr8:42909906 0.00E+00 transposed
Lac5g2651 Lac-Chr5:44976485 Lac8g2506 Lac-Chr8:42909906 3.90E-157 transposed
Lac7g0751 Lac-Chr7:6004913 Lac8g2506 Lac-Chr8:42909906 2.70E-74 transposed
Lac1g2030 Lac-Chr1:41874176 Lac8g2506 Lac-Chr8:42909906 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2506 K03283 - csv:101211905 1228.39