Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2506 | ATGGCGGGAAAGGGCGAGGGTCCGGCCATCGGTATCGATCTCGGTACCACTTACTCTTGTGTTGGAGTTTGGCAGCACGATCGTGTTGAGATCATTGCCAATGATCAGGGGAATCGGACGACGCCGTCCTATGTGGCTTTCACTGACAGCGAGCGGCTCATCGGCGATGCTGCCAAGAACCAAGTCGCTATGAATCCTCTCAACACCGTCTTCGATGCGAAGCGGTTGATTGGAAGGAGATTCACCGACCCCTCGGTGCAGAGCGATGTGAAATTATGGCCGTTCAAGGTCATCCCCGGTCCAGGTGACAAACCCATGATCGTCGTCAACTACAAAGGCGAAGAGAAGCAGTTCGCCGCTGAGGAAATCTCTTCCATGGTCCTCACGAAAATGCGTGAGATAGCAGAAGCTTACCTCGGTTCGTCCGTGAAGAACGCCGTCGTCACCGTTCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACAAAAGATGCTGGTGTCATTGCCGGTCTCAATGTCATGCGGATCATCAATGAGCCTACAGCCGCAGCTATCGCTTATGGACTCGACAAAAAGGCAACCAGTGTCGGCGAGAAGAATGTACTGATATTTGATCTGGGTGGAGGAACATTTGATGTCTCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACAGCCGGTGACACCCATCTCGGAGGCGAGGACTTCGACAACAGATTGGTTAACCATTTCGTTCAGGAATTCAAGAGAAAGCACAAGAAGGACATCAGTGGAAATCCGAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAGAGGGCCAAGAGGACGCTTTCATCCACTGCCCAAACTACAATCGAGATTGATTCTTTGTATGAGGGAATTGATTTCTACACAACCATCACTCGTGCTAGATTCGAGGAGCTCAACATGGACTTGTTCCGAAAGTGTATGGAGCCAGTTGAGAAGTGTCTGAGAGATGCAAAGATGGACAAAAGCACCGTCCATGATGTTGTCCTTGTTGGTGGCTCTACAAGGATTCCTAAGGTGCAGCAGCTATTGCAGGATTTCTTCAATGGCAAAGAACTCTGCAAAAGTATCAATCCTGATGAGGCAGTTGCTTATGGGGCTGCTGTCCAAGCTGCGATCTTGAGTGGTGAAGGAAATGAGAAAGTGCAGGATCTTCTTCTTTTGGATGTTACTCCTCTGTCTCTTGGTTTGGAAACTGCAGGAGGTGTGATGACAGTTTTGATTCCAAGGAATACCACCATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTCATTCAAGTCTACGAGGGTGAAAGGACAAGAACCAGAGATAACAACTTGTTGGGCAAGTTTGAACTTTCCGGCATCCCTCCGGCTCCAAGAGGTGTTCCACAGATCACTGTCTGCTTTGACATTGACGCCAACGGTATTCTAAACGTTTCTGCAGAGGACAAGACCACCGGACAGAAGAATAAGATCACCATTACCAACGACAAAGGAAGGTTGTCCAAAGAGGAGATTGAGAAACTGGTTCAGGAAGCAGAGAAGTTCAAGGCCGAAGATGAGGAACACAAGAAGAAAGTTGAATCAAAGAACGCTTTAGAGAACTATGCATACAACATGAGGAACACCATCAGGGATGAAAAGATCAGTGGTAAACTTGCGCCAGCAGATAAGAAGAAGATTGAAGATGCAGTCGAACAGGCCATCCAGTGGCTAGACAGCAACCAGCTCGCTGAGTCAGATGAATTTGAAGACAAGATGAAGGAACTTGAATCTATCTGCAACCCCATCATAGCCAAGATGTATCAAGGTGGTGCTGACATGGGCGGCAGCGGAATGGATGATGATGCTCCTCCTTCTGGCGGCAGCGGTGCTGGTCCTAAGATTGAAGAAGTTGATTAA | 1947 | 48.38 | MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPLNTVFDAKRLIGRRFTDPSVQSDVKLWPFKVIPGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGSSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKFKAEDEEHKKKVESKNALENYAYNMRNTIRDEKISGKLAPADKKKIEDAVEQAIQWLDSNQLAESDEFEDKMKELESICNPIIAKMYQGGADMGGSGMDDDAPPSGGSGAGPKIEEVD | 648 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 42909906 | 42912316 | - | Lag0029893.1 | Lac8g2506 | 618340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2506 | 648 | Gene3D | Actin; Chain A, domain 4 | 235 | 318 | - | - | |
Lac8g2506 | 648 | FunFam | Heat shock 70 kDa protein | 197 | 260 | - | - | |
Lac8g2506 | 648 | SUPERFAMILY | Actin-like ATPase domain | 198 | 388 | IPR043129 | - | |
Lac8g2506 | 648 | FunFam | Heat shock 70 kDa protein | 71 | 126 | - | - | |
Lac8g2506 | 648 | Gene3D | - | 10 | 384 | - | - | |
Lac8g2506 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 1. | 12 | 19 | IPR018181 | - | |
Lac8g2506 | 648 | CDD | HSPA1-2_6-8-like_NBD | 9 | 387 | - | - | |
Lac8g2506 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 203 | 216 | IPR018181 | - | |
Lac8g2506 | 648 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 391 | 545 | IPR029047 | - | |
Lac8g2506 | 648 | Gene3D | - | 546 | 619 | IPR029048 | - | |
Lac8g2506 | 648 | FunFam | Heat shock cognate 70 kDa protein 2 | 319 | 366 | - | - | |
Lac8g2506 | 648 | FunFam | Heat shock 70 kDa | 391 | 545 | - | - | |
Lac8g2506 | 648 | MobiDBLite | consensus disorder prediction | 619 | 648 | - | - | |
Lac8g2506 | 648 | FunFam | Heat shock 70 kDa protein | 539 | 648 | - | - | |
Lac8g2506 | 648 | Pfam | Hsp70 protein | 9 | 618 | IPR013126 | GO:0005524(InterPro)|GO:0140662(InterPro) | |
Lac8g2506 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 3. | 340 | 354 | IPR018181 | - | |
Lac8g2506 | 648 | SUPERFAMILY | Actin-like ATPase domain | 8 | 191 | IPR043129 | - | |
Lac8g2506 | 648 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 392 | 549 | IPR029047 | - | |
Lac8g2506 | 648 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 9 | 582 | IPR013126 | GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro) | |
Lac8g2506 | 648 | FunFam | Heat shock 70 kDa | 235 | 318 | - | - | |
Lac8g2506 | 648 | Gene3D | - | 71 | 126 | - | - | |
Lac8g2506 | 648 | Coils | Coil | 514 | 541 | - | - | |
Lac8g2506 | 648 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 543 | 622 | IPR029048 | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 209 | 219 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 337 | 353 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 396 | 415 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 8 | 21 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 477 | 493 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 36 | 48 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 146 | 166 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 369 | 389 | - | - | |
Lac8g2506 | 648 | PRINTS | 70kDa heat shock protein signature | 58 | 66 | - | - | |
Lac8g2506 | 648 | Gene3D | - | 192 | 366 | - | - | |
Lac8g2506 | 648 | FunFam | Heat shock protein 70 | 10 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g2731 | Lac-Chr4:46236183 | Lac8g2506 | Lac-Chr8:42909906 | 0.00E+00 | dispersed | |
Lac4g2734 | Lac-Chr4:46245067 | Lac8g2506 | Lac-Chr8:42909906 | 1.00E-16 | dispersed | |
Lac8g2498 | Lac-Chr8:42879624 | Lac8g2506 | Lac-Chr8:42909906 | 0.00E+00 | proximal | |
Lac11g1979 | Lac-Chr11:35319161 | Lac8g2506 | Lac-Chr8:42909906 | 1.70E-229 | transposed | |
Lac2g1894 | Lac-Chr2:19766686 | Lac8g2506 | Lac-Chr8:42909906 | 2.80E-23 | transposed | |
Lac3g0230 | Lac-Chr3:1615866 | Lac8g2506 | Lac-Chr8:42909906 | 0.00E+00 | transposed | |
Lac5g2651 | Lac-Chr5:44976485 | Lac8g2506 | Lac-Chr8:42909906 | 3.90E-157 | transposed | |
Lac7g0751 | Lac-Chr7:6004913 | Lac8g2506 | Lac-Chr8:42909906 | 2.70E-74 | transposed | |
Lac1g2030 | Lac-Chr1:41874176 | Lac8g2506 | Lac-Chr8:42909906 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2506 | K03283 | - | csv:101211905 | 1228.39 |