Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2507 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGGAGTGCCTGTGAGACTAATAGCACTCAACACCTTCCGCCTCCGCCACCGCCAGCTGCAGCTGGCGCTGGCGGAGGCGGAGGGGGTGGCGGTGGTGGTGGAGGACCTGGCTCGATTAGACCTGGGTCAATGACGGATCGAGCTAGACTGGCGAAGATACCGCAACCGGAAGCTGGGCTAAAATGTCCGAGATGCGAATCGACGAACACGAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAGCCGCGGCACTTCTGCAAGACGTGCCGACGGTACTGGACGAGAGGCGGGGCGATGAGGAACGTGCCGGTCGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAAAGGAGGAAGCAACAGGTCAAAGTCTCCGGCGGGTTCGAGTACTTCAACAAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCACCAATTGGCCACTCCTCCAGCAACCCATCTGCCCTTTTTGGCTCCAAATTTACACCATCTGAGTGATTTTGGCAACATCGGTTTGAACTTTGAAGGCCTTCACATCCCTTCACTGCCATCATCAGCAGCAGGAGAATCATCGATTTTATCAAGTGGAATTTCGGATCATCACCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCACCATCAACCTGATTTCTCAAGTTACCAACGTTTGTCAAAGCCATTATTGGACAGTGGATTTAGTTCTACAGCTCATCAGCTGGGGAACAACAATAATAACAGTAGCATGAAAATTATGGAGGATACACAAGGGATTAACAGTAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAACTACAACAGCAACAGCTGGGAACATTGCATGGACTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1050 47.62 MVFSSVPVFLDPPNWPTQQPNQLQGSACETNSTQHLPPPPPPAAAGAGGGGGGGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLATPPATHLPFLAPNLHHLSDFGNIGLNFEGLHIPSLPSSAAGESSILSSGISDHHQWKIPFFANLHQQNGMYSNFMAEDHHHQPDFSSYQRLSKPLLDSGFSSTAHQLGNNNNNSSMKIMEDTQGINSNLSRNFLGIQPNDQFWNSTTTATAGNIAWTDQISDHFNSTSSTSHLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42922708 42923918 + Lag0029894.1 Lac8g2507 618341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2507 349 MobiDBLite consensus disorder prediction 1 68 - -
Lac8g2507 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 268 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 MobiDBLite consensus disorder prediction 143 162 - -
Lac8g2507 349 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 Pfam Dof domain, zinc finger 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 MobiDBLite consensus disorder prediction 11 33 - -
Lac8g2507 349 MobiDBLite consensus disorder prediction 125 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2704 Lac-Chr7:46109159 Lac8g2507 Lac-Chr8:42922708 1.30E-36 dispersed
Lac8g2507 Lac-Chr8:42922708 Lac9g2549 Lac-Chr9:44155337 1.30E-26 dispersed
Lac1g2032 Lac-Chr1:41895287 Lac8g2507 Lac-Chr8:42922708 5.30E-36 wgd
Lac10g3099 Lac-Chr10:45399575 Lac8g2507 Lac-Chr8:42922708 2.70E-50 wgd
Lac13g0982 Lac-Chr13:8175176 Lac8g2507 Lac-Chr8:42922708 1.50E-45 wgd
Lac8g2507 Lac-Chr8:42922708 Lac9g2483 Lac-Chr9:43664546 7.60E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24341 PF02701 zf-Dof 4.40E-31 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2507 - - - 0.0