Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2507 ATGGTTTTCTCTTCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAACCAAATCAGCTCCAAGGGAGTGCCTGTGAGACTAATAGCACTCAACACCTTCCGCCTCCGCCACCGCCAGCTGCAGCTGGCGCTGGCGGAGGCGGAGGGGGTGGCGGTGGTGGTGGAGGACCTGGCTCGATTAGACCTGGGTCAATGACGGATCGAGCTAGACTGGCGAAGATACCGCAACCGGAAGCTGGGCTAAAATGTCCGAGATGCGAATCGACGAACACGAAGTTTTGTTACTTCAACAACTACAGTCTCACTCAGCCGCGGCACTTCTGCAAGACGTGCCGACGGTACTGGACGAGAGGCGGGGCGATGAGGAACGTGCCGGTCGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAAAGGAGGAAGCAACAGGTCAAAGTCTCCGGCGGGTTCGAGTACTTCAACAAGCACAGTGTCATCAAACAGTTGCACAACAGATATCATTAGCCACCAATTGGCCACTCCTCCAGCAACCCATCTGCCCTTTTTGGCTCCAAATTTACACCATCTGAGTGATTTTGGCAACATCGGTTTGAACTTTGAAGGCCTTCACATCCCTTCACTGCCATCATCAGCAGCAGGAGAATCATCGATTTTATCAAGTGGAATTTCGGATCATCACCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATCACCATCAACCTGATTTCTCAAGTTACCAACGTTTGTCAAAGCCATTATTGGACAGTGGATTTAGTTCTACAGCTCATCAGCTGGGGAACAACAATAATAACAGTAGCATGAAAATTATGGAGGATACACAAGGGATTAACAGTAATTTGTCAAGAAATTTTCTGGGAATTCAACCAAATGATCAGTTCTGGAATTCAACTACAACAGCAACAGCTGGGAACATTGCATGGACTGATCAAATTTCAGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1050 47.62 MVFSSVPVFLDPPNWPTQQPNQLQGSACETNSTQHLPPPPPPAAAGAGGGGGGGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSKGGSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLATPPATHLPFLAPNLHHLSDFGNIGLNFEGLHIPSLPSSAAGESSILSSGISDHHQWKIPFFANLHQQNGMYSNFMAEDHHHQPDFSSYQRLSKPLLDSGFSSTAHQLGNNNNNSSMKIMEDTQGINSNLSRNFLGIQPNDQFWNSTTTATAGNIAWTDQISDHFNSTSSTSHLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42922708 42923918 + Lag0029894.1 Lac8g2507 618341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2507 349 MobiDBLite consensus disorder prediction 1 68 - -
Lac8g2507 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 72 268 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 MobiDBLite consensus disorder prediction 143 162 - -
Lac8g2507 349 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 Pfam Dof domain, zinc finger 84 138 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac8g2507 349 MobiDBLite consensus disorder prediction 11 33 - -
Lac8g2507 349 MobiDBLite consensus disorder prediction 125 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2507 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2704 Lac-Chr7:46109159 Lac8g2507 Lac-Chr8:42922708 1.30E-36 dispersed
Lac8g2507 Lac-Chr8:42922708 Lac9g2549 Lac-Chr9:44155337 1.30E-26 dispersed
Lac1g2032 Lac-Chr1:41895287 Lac8g2507 Lac-Chr8:42922708 5.30E-36 wgd
Lac10g3099 Lac-Chr10:45399575 Lac8g2507 Lac-Chr8:42922708 2.70E-50 wgd
Lac13g0982 Lac-Chr13:8175176 Lac8g2507 Lac-Chr8:42922708 1.50E-45 wgd
Lac8g2507 Lac-Chr8:42922708 Lac9g2483 Lac-Chr9:43664546 7.60E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT1G29160 52.5 1.6e-41 166.8
Lac10g0947 . 15 170 C2C2-Dof Transcription Factor Family AT2G34140 50.9 1.1e-39 160.6
Lac8g2507 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 66.7 6.8e-38 155.6
Lac7g2704 . 67 141 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.4e-37 152.9
Lac3g0612 . 115 466 C2C2-Dof Transcription Factor Family AT3G47500 53.1 2.2e-87 320.5
Lac8g0724 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.3 5.0e-76 282.7
Lac1g2524 . 1 149 C2C2-Dof Transcription Factor Family AT5G66940 56.3 2.7e-38 156.4
Lac7g2704 . 66 141 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.8e-38 157.1
Lac1g2032 . 53 126 C2C2-Dof Transcription Factor Family AT5G02460 87.8 9.0e-37 152.1
Lac10g3099 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.9e-37 153.7
Lac3g0537 . 29 325 C2C2-Dof Transcription Factor Family AT5G60850 52.9 2.4e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24341 PF02701 zf-Dof 4.40E-31 No_clan Lac TF