Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2518 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGTAGACTCTTCTGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACCGGTGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACGTTCTATAACGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTCTATGCCAGTGGTCGAACGACTGGAATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTCCCCATTTATGAGGGCTATGCTCTCCCACACGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTCACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTTTCATATATTGCCCTGGACTATGAACAGGAACTTGAAACTTCCAAGACCAGCTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATCGGCGCTGAGCGTTTTAGATGCCCGGAAGTACTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATCGCTGATAGAATGAGCAAGGAGATCTCCGCGTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAATACAGTGTCTGGATTGGTGGTTCAATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA 1113 47.44 MADAEDIQPLVCDNGTGMVKVDSSVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42999092 43000588 + Lag0029905.1 Lac8g2518 618352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2518 370 ProSitePatterns Actins signature 2. 351 359 IPR004001 -
Lac8g2518 370 Gene3D - 10 364 - -
Lac8g2518 370 Gene3D Actin; Chain A, domain 4 175 266 - -
Lac8g2518 370 SUPERFAMILY Actin-like ATPase domain 142 370 IPR043129 -
Lac8g2518 370 FunFam Actin, muscle 175 266 - -
Lac8g2518 370 CDD NBD_sugar-kinase_HSP70_actin 69 176 - -
Lac8g2518 370 ProSitePatterns Actins and actin-related proteins signature. 99 111 IPR020902 -
Lac8g2518 370 FunFam Actin, alpha skeletal muscle 248 323 - -
Lac8g2518 370 FunFam Actin, alpha skeletal muscle 3 169 - -
Lac8g2518 370 SUPERFAMILY Actin-like ATPase domain 6 148 IPR043129 -
Lac8g2518 370 SMART actin_3 7 370 IPR004000 -
Lac8g2518 370 Pfam Actin 5 370 IPR004000 -
Lac8g2518 370 ProSitePatterns Actins signature 1. 48 58 IPR004001 -
Lac8g2518 370 FunFam Actin, alpha skeletal muscle 324 370 - -
Lac8g2518 370 PRINTS Actin signature 21 30 IPR004000 -
Lac8g2518 370 PRINTS Actin signature 135 154 IPR004000 -
Lac8g2518 370 PRINTS Actin signature 231 247 IPR004000 -
Lac8g2518 370 PRINTS Actin signature 56 78 IPR004000 -
Lac8g2518 370 PRINTS Actin signature 110 123 IPR004000 -
Lac8g2518 370 PRINTS Actin signature 44 55 IPR004000 -
Lac8g2518 370 PANTHER ACTIN 8 362 IPR004000 GO:0005737(PANTHER)
Lac8g2518 370 Gene3D - 133 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2518 K10355 - - csv:101220611 716.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0288 Lac-Chr12:3204737 Lac8g2518 Lac-Chr8:42999092 3.50E-200 dispersed
Lac1g2407 Lac-Chr1:45486567 Lac8g2518 Lac-Chr8:42999092 5.60E-204 dispersed
Lac3g0489 Lac-Chr3:3733944 Lac8g2518 Lac-Chr8:42999092 1.20E-66 dispersed
Lac7g1468 Lac-Chr7:15420607 Lac8g2518 Lac-Chr8:42999092 4.20E-53 dispersed
Lac8g2518 Lac-Chr8:42999092 Lac9g0272 Lac-Chr9:4360476 9.90E-123 dispersed
Lac9g2922 Lac-Chr9:47033314 Lac8g2518 Lac-Chr8:42999092 6.20E-07 transposed
Lac1g2042 Lac-Chr1:41970900 Lac8g2518 Lac-Chr8:42999092 5.70E-191 wgd
Lac8g2518 Lac-Chr8:42999092 Lac9g2477 Lac-Chr9:43622271 7.20E-190 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 9.6e-214 740.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT2G37620 95.5 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 3.1e-212 734.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT2G37620 93.1 1.5e-203 706.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT2G37620 96.1 1.3e-199 693.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT2G37620 86.7 5.1e-199 691.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT2G37620 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT2G37620 95.0 2.0e-131 466.5
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-213 739.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.3e-210 729.6
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G59370 94.4 4.9e-210 727.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G59370 94.2 4.8e-205 711.1
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-198 689.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G59370 87.2 3.3e-198 688.3
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G59370 87.5 2.0e-155 546.2
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT5G59370 94.2 1.3e-130 463.8
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.6e-213 738.0
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.8e-211 730.7
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G46520 94.7 2.2e-210 728.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G46520 94.4 2.1e-205 712.2
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G46520 96.1 5.6e-198 687.6
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G46520 86.9 9.6e-198 686.8
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G46520 87.9 9.1e-156 547.4
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G46520 94.6 4.6e-131 465.3
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 6.6e-215 743.8
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 4.0e-212 734.6
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G12110 93.4 2.4e-204 708.8
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G12110 96.3 1.0e-199 693.3
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G12110 87.2 1.8e-199 692.6
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G12110 87.2 7.0e-156 547.7
Lac9g0272 . 1 241 Cytoskeleton Gene Families AT3G12110 94.2 2.3e-130 463.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT3G18780 93.1 7.1e-209 723.8
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.7e-207 719.2
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.3e-207 718.8
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT3G18780 89.7 7.9e-200 693.7
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT3G18780 92.4 2.9e-194 675.2
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT3G18780 82.2 7.9e-192 667.2
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT3G18780 83.8 4.0e-151 531.9
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT3G18780 90.8 2.3e-127 453.0
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT1G49240 93.4 2.4e-209 725.3
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 6.0e-208 720.7
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 7.9e-208 720.3
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT1G49240 89.9 2.7e-200 695.3
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT1G49240 92.1 6.5e-194 674.1
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT1G49240 82.5 2.7e-192 668.7
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT1G49240 84.1 1.4e-151 533.5
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT1G49240 91.3 8.0e-128 454.5
Lac1g2407 . 27 403 Cytoskeleton Gene Families AT5G09810 98.4 1.2e-216 749.6
Lac12g0288 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.3e-214 741.1
Lac10g2624 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 8.1e-213 736.9
Lac8g2518 . 1 370 Cytoskeleton Gene Families AT5G09810 92.8 4.5e-203 704.5
Lac1g2042 . 1 356 Cytoskeleton Gene Families AT5G09810 96.1 5.1e-199 691.0
Lac9g2477 . 1 405 Cytoskeleton Gene Families AT5G09810 86.4 4.3e-198 688.0
Lac13g0981 . 1 292 Cytoskeleton Gene Families AT5G09810 86.6 7.7e-155 544.3
Lac9g0272 . 1 240 Cytoskeleton Gene Families AT5G09810 97.5 2.9e-133 472.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 1.3e-56 216.5
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 1.7e-56 216.1
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT2G19760 74.0 6.4e-56 214.2
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT2G19760 72.5 2.3e-53 205.7
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT2G19760 71.8 5.1e-53 204.5
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 2.2e-56 215.7
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29350 77.9 2.9e-56 215.3
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 2.4e-55 212.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29350 71.8 8.6e-53 203.8
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29350 71.8 1.9e-52 202.6
Lac6g3044 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.2e-64 242.3
Lac6g3043 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 3.1e-58 221.9
Lac4g2933 . 1 131 Cytoskeleton Gene Families AT4G29340 75.4 4.5e-57 218.0
Lac2g0830 . 309 439 Cytoskeleton Gene Families AT4G29340 71.6 2.6e-52 202.2
Lac11g0782 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 7.5e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276