Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2518 | ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGATAATGGAACAGGAATGGTTAAGGTAGACTCTTCTGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACCGGTGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACGTTCTATAACGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTTAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTCTATGCCAGTGGTCGAACGACTGGAATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACAGTCCCCATTTATGAGGGCTATGCTCTCCCACACGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTCACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATATTCATTCACTACCACAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTTTCATATATTGCCCTGGACTATGAACAGGAACTTGAAACTTCCAAGACCAGCTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATCGGCGCTGAGCGTTTTAGATGCCCGGAAGTACTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAAACTACATATAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGATCTGTATGGCAACATCGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATCGCTGATAGAATGAGCAAGGAGATCTCCGCGTTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAAAGAAAATACAGTGTCTGGATTGGTGGTTCAATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCAATTGTGCACAGGAAATGCTTCTAA | 1113 | 47.44 | MADAEDIQPLVCDNGTGMVKVDSSVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 370 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 42999092 | 43000588 | + | Lag0029905.1 | Lac8g2518 | 618352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2518 | 370 | ProSitePatterns | Actins signature 2. | 351 | 359 | IPR004001 | - | |
| Lac8g2518 | 370 | Gene3D | - | 10 | 364 | - | - | |
| Lac8g2518 | 370 | Gene3D | Actin; Chain A, domain 4 | 175 | 266 | - | - | |
| Lac8g2518 | 370 | SUPERFAMILY | Actin-like ATPase domain | 142 | 370 | IPR043129 | - | |
| Lac8g2518 | 370 | FunFam | Actin, muscle | 175 | 266 | - | - | |
| Lac8g2518 | 370 | CDD | NBD_sugar-kinase_HSP70_actin | 69 | 176 | - | - | |
| Lac8g2518 | 370 | ProSitePatterns | Actins and actin-related proteins signature. | 99 | 111 | IPR020902 | - | |
| Lac8g2518 | 370 | FunFam | Actin, alpha skeletal muscle | 248 | 323 | - | - | |
| Lac8g2518 | 370 | FunFam | Actin, alpha skeletal muscle | 3 | 169 | - | - | |
| Lac8g2518 | 370 | SUPERFAMILY | Actin-like ATPase domain | 6 | 148 | IPR043129 | - | |
| Lac8g2518 | 370 | SMART | actin_3 | 7 | 370 | IPR004000 | - | |
| Lac8g2518 | 370 | Pfam | Actin | 5 | 370 | IPR004000 | - | |
| Lac8g2518 | 370 | ProSitePatterns | Actins signature 1. | 48 | 58 | IPR004001 | - | |
| Lac8g2518 | 370 | FunFam | Actin, alpha skeletal muscle | 324 | 370 | - | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 21 | 30 | IPR004000 | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 135 | 154 | IPR004000 | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 231 | 247 | IPR004000 | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 56 | 78 | IPR004000 | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 110 | 123 | IPR004000 | - | |
| Lac8g2518 | 370 | PRINTS | Actin signature | 44 | 55 | IPR004000 | - | |
| Lac8g2518 | 370 | PANTHER | ACTIN | 8 | 362 | IPR004000 | GO:0005737(PANTHER) | |
| Lac8g2518 | 370 | Gene3D | - | 133 | 333 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0288 | Lac-Chr12:3204737 | Lac8g2518 | Lac-Chr8:42999092 | 3.50E-200 | dispersed | |
| Lac1g2407 | Lac-Chr1:45486567 | Lac8g2518 | Lac-Chr8:42999092 | 5.60E-204 | dispersed | |
| Lac3g0489 | Lac-Chr3:3733944 | Lac8g2518 | Lac-Chr8:42999092 | 1.20E-66 | dispersed | |
| Lac7g1468 | Lac-Chr7:15420607 | Lac8g2518 | Lac-Chr8:42999092 | 4.20E-53 | dispersed | |
| Lac8g2518 | Lac-Chr8:42999092 | Lac9g0272 | Lac-Chr9:4360476 | 9.90E-123 | dispersed | |
| Lac9g2922 | Lac-Chr9:47033314 | Lac8g2518 | Lac-Chr8:42999092 | 6.20E-07 | transposed | |
| Lac1g2042 | Lac-Chr1:41970900 | Lac8g2518 | Lac-Chr8:42999092 | 5.70E-191 | wgd | |
| Lac8g2518 | Lac-Chr8:42999092 | Lac9g2477 | Lac-Chr9:43622271 | 7.20E-190 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2518 | K10355 | - | csv:101220611 | 716.072 |