Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2527 ATGGCGCCAACTATTTCAACGACCTTTCAGATATCATTCTCTTTGTTGCTAATAATGTCGTCGTTTGCTGTAGAAGCCAGAGAACTTACTGGAGTATACGGCGGCGGGCCGTGGCAGAGCGCCCACGCCACGTTCTACGGTGGCAATGACGCCTCCGGCACTATGGGCGGGGCGTGTGGTTACGGCAACTTGTACAGCCAGGGCTACGGCGTGAACACGGCGGCGCTCAGCACCGCCCTGTTCAACGACGGCTACAGCTGCGGAGCCTGTTTCGAAATCAAGTGCGTGAATGACCCGCAATGGTGCCACGCCGGTAACCCCTCAATCTTCGTCACCGCCACCAACTTTTGTCCTCCCAACTACGCTCTGCCTAATGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCTCCATGCCCATGTTCCTCAAAATCGCTCAATATCGTGCCGGGATCGTCCCCGTCTCCTTCCGCAGGGTTGCATGCAGGAAGGAGGGAGGGATGAGGTTTACGATCAATGGGTTCAAGTATTTCAATTTGGTATTGATAACCAACGTGGCAGGTGCAGGGGATATTGTGAGTGTGAGCATCAAGGGGTCGAGGACAGGGTGGACAAGTATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTGGTGGGTCAATCACTTTCTTTTAGTGTCAAATCCAGCGATGGAAGGATTTCAACTTCCTCCAATATTGTTCCTTCTGATTGGCAGTTTGGTCAAACTTTCACAGGCAAAAACTTCAGATTCTGA 795 52.7 MAPTISTTFQISFSLLLIMSSFAVEARELTGVYGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGYSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAQYRAGIVPVSFRRVACRKEGGMRFTINGFKYFNLVLITNVAGAGDIVSVSIKGSRTGWTSMTRNWGQNWQSNAVLVGQSLSFSVKSSDGRISTSSNIVPSDWQFGQTFTGKNFRF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43068512 43069524 - Lag0029914.1 Lac8g2527 618361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2527 264 SUPERFAMILY PHL pollen allergen 167 259 IPR036749 -
Lac8g2527 264 Gene3D - 171 262 IPR036749 -
Lac8g2527 264 SUPERFAMILY Barwin-like endoglucanases 37 188 IPR036908 -
Lac8g2527 264 PRINTS Expansin signature 128 145 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 169 181 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 216 237 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 95 106 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 109 119 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 181 202 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 PRINTS Expansin signature 145 158 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 Gene3D - 24 166 IPR036908 -
Lac8g2527 264 Pfam Lytic transglycolase 73 160 IPR009009 -
Lac8g2527 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Lac8g2527 264 CDD DPBB_EXPA_N 37 165 - -
Lac8g2527 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 170 IPR007112 -
Lac8g2527 264 PANTHER EXPANSIN-A15 15 262 IPR002963 GO:0009664(InterPro)
Lac8g2527 264 FunFam Expansin 170 262 - -
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Lac8g2527 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Lac8g2527 264 SMART dpbb_1 73 160 IPR007112 -
Lac8g2527 264 FunFam Expansin 27 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0452 Lac-Chr12:5015580 Lac8g2527 Lac-Chr8:43068512 2.40E-72 dispersed
Lac4g0593 Lac-Chr4:13818684 Lac8g2527 Lac-Chr8:43068512 2.50E-74 dispersed
Lac7g2733 Lac-Chr7:46407114 Lac8g2527 Lac-Chr8:43068512 2.00E-122 dispersed
Lac8g2527 Lac-Chr8:43068512 Lac8g2843 Lac-Chr8:45632129 3.50E-98 dispersed
Lac1g2050 Lac-Chr1:42040877 Lac8g2527 Lac-Chr8:43068512 7.40E-125 wgd
Lac13g0995 Lac-Chr13:8319658 Lac8g2527 Lac-Chr8:43068512 1.80E-126 wgd
Lac8g2527 Lac-Chr8:43068512 Lac9g2465 Lac-Chr9:43539314 1.90E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2527 - - - 0.0