Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2540 | ATGGCGGCTTCTCTTTGCTGCTTTTTGCTTCTTTTTTCTGTCTCTTTCTTGTTGACTGCTCCAACTTCTTCTGCTTCCTCGTTGGCTGCTGTTCAAGATCCTCATCTTGTCGTTCAAGAAGTTCAAAGGAGCATAAATTCATCAAGAAGAAACTTAGGATATTTCTCCTGCGGAACCGGAAACCCAATAGACGACTGCTGGAGATGCGACCCCAATTGGGAAACCAACCGCAAGCGCCTGGCCGACTGCGCCATCGGCTTCGGCAAGAACGCCATCGGCGGCAGAAACGGCCGCTTCTACGTGGTCACCGACGCCGGCGACGACGACCCTCTCAACCCCCGCCCGGGAACCCTCCGCCACGCCGTCATCCAAAACGAGCCCCTCTGGATCATCTTCAAACGCGACATGGTCATCCAACTCAGGCAGGAGCTGGTGATGAACTCCTTCAAGACCATCGACGGCCGTGGGGCCAGCGTCCACGTGGCCGGTGGGCCATGCATAACGATCCACTACGCGACGAACATCATCCTACATGGCATCCACATACACGACTGCAAGAGAGGGGGGAATGGTAACATACGGGACTCCCCACAGCACTCCGGCTGGTGGACCGTATCGGACGGCGATGGAGTCTCGATCTTCGGCGGGCGGCATATCTGGGTTGACCACTGTTCTTTGTCGAATTGCAATGATGGGCTGATCGACGCAATTCATGGATCCACTGCTATTACTATTTCGAATAATTATATGACTCATCATGATAAGGTGATGCTGTTGGGACATAGTGACTCTTATACTCAAGATAAGGATATGCAGGTTACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTCCAACGAATGCCGAGATGCAGACATGGGTATTTCCATGTGGTGAACAACGATTACACCCACTGGGAAATGTACGCAATCGGAGGGAGTGCTTCGCCGACCATATACAGCCAAGGCAACAGATTTTTGGCGCCGGACAACCGCTTCCGGAAGCAGGTGACAAAGCACGAGGACGCGCCGGAGAGCGAGTGGCGCCACTGGAACTGGCGGTCGGAGGGCGACATGATGTTGAACGGCGCCTATTTCCTGCAGTCCGGCGCCGGCGCCGCCTCCAGCTACGCCAGAGCTTACAGCCTCAGCGCTAGACCGTCTTCTCTCGTCGGCTCTATCACCGTCACCGCCGGCGCCCTCAACTGCCGCAGAGGCTCCCGCTGCTAG | 1230 | 55.37 | MAASLCCFLLLFSVSFLLTAPTSSASSLAAVQDPHLVVQEVQRSINSSRRNLGYFSCGTGNPIDDCWRCDPNWETNRKRLADCAIGFGKNAIGGRNGRFYVVTDAGDDDPLNPRPGTLRHAVIQNEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHVAGGPCITIHYATNIILHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGRHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPDNRFRKQVTKHEDAPESEWRHWNWRSEGDMMLNGAYFLQSGAGAASSYARAYSLSARPSSLVGSITVTAGALNCRRGSRC | 409 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43165558 | 43167884 | - | Lag0029927.1 | Lac8g2540 | 618374 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2540 | 409 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 406 | IPR045032 | GO:0030570(InterPro) | |
| Lac8g2540 | 409 | Gene3D | - | 60 | 402 | IPR012334 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 351 | 375 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 207 | 228 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 83 | 100 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 107 | 132 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 143 | 159 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 380 | 403 | IPR018082 | - | |
| Lac8g2540 | 409 | PRINTS | Pollen allergen Amb family signature | 287 | 306 | IPR018082 | - | |
| Lac8g2540 | 409 | SMART | amb_all | 135 | 332 | IPR002022 | - | |
| Lac8g2540 | 409 | SUPERFAMILY | Pectin lyase-like | 44 | 404 | IPR011050 | - | |
| Lac8g2540 | 409 | FunFam | Pectate lyase | 60 | 402 | - | - | |
| Lac8g2540 | 409 | Pfam | Pectate lyase | 142 | 326 | IPR002022 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g0530 | Lac-Chr10:4115298 | Lac8g2540 | Lac-Chr8:43165558 | 1.00E-189 | dispersed | |
| Lac12g2078 | Lac-Chr12:37893849 | Lac8g2540 | Lac-Chr8:43165558 | 1.40E-171 | dispersed | |
| Lac1g3191 | Lac-Chr1:52006376 | Lac8g2540 | Lac-Chr8:43165558 | 7.40E-129 | dispersed | |
| Lac6g0705 | Lac-Chr6:5993368 | Lac8g2540 | Lac-Chr8:43165558 | 2.40E-188 | dispersed | |
| Lac7g0490 | Lac-Chr7:3919748 | Lac8g2540 | Lac-Chr8:43165558 | 7.40E-173 | dispersed | |
| Lac8g0534 | Lac-Chr8:7687450 | Lac8g2540 | Lac-Chr8:43165558 | 3.90E-134 | dispersed | |
| Lac8g2372 | Lac-Chr8:41832794 | Lac8g2540 | Lac-Chr8:43165558 | 2.90E-141 | dispersed | |
| Lac8g2540 | Lac-Chr8:43165558 | Lac11g2537 | Lac-Chr11:41447143 | 8.30E-171 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2540 | K01728 | - | csv:101217834 | 749.584 |