Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2547 | ATGATATCAGTAGCACTGATAAACGCCATGGAAGTTCCTGCAAGTTTAATCAGCTCTATCACTTTAGCTTTGAGCTTGGCAATGGCGGCCATAATCATCTGCCACTTTGTTCTGAAACTCTTTGCAACGGCACCACCAAACCCTAATTTGCCTCCTGGCTGCATGGGCTTCCCCTTCGTTGGAGAGACTCTCAGCTTCCTCAAGCCCCATCATTCTAACTCCATGGGAACCTTCCTCCACCATCACTGCTCAAGGTTTGGAAAGGTTTTCAAATCTCATCTATTCGGGTCGCCGGCGATAGTGTCATGTGATCGAGAGCTAAACATGTTCATTCTTCAGAACGACGACAAGCTTTTCAAAGTGAGTTATCCGAAGGCCATGCATGGCATTCTCGGCAGCAATTCTTTGATTATCGCCGCCGGTGACACCCACCGGAAGCTGAGAAACGTCGTCGTTAGCTTCATCAGCTGGTGCAAGTCCAAACCCACTTTTCTTCGCTGCGTGGACAAGCTCTCCATCTCTTTAATGGAGTCATGGAGATGCCAAACCCAAGTACTTTTCTGCAAACAAGTTAAAATGTTTGCTCTTAGCGTTATGGTGAAAGAATTGTTGGGCATTGGGGCAAACGAGTCGATAGGGTCAAAGATATTGGAAGAGTTTGAAACGTACATGAAAGGCTTTGTTTCTTTGCCTCTAAATCTCCCGGGGACTCCATATTCTAAGGCGGTCAAGGCAAGGAAGAGACTTTCTTGCATTGTGAAAGAGATGATGAGAGAGGGGAAAAGGAGGGAATTGGTGGAAAAGGCAGCTGGGGATGATGATAATTTTCTACAAGTGATAATGTCAAATTGGAAACTTGATGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTCATGGGATTGATTGTCTATTTTCTTGCACATTCACCACCCAATGTTCTTGCAAAATTAAAGGAAGAACATCAAGCAATAAGAATTGGCAAAAGGAATGGAGAATGTCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACATGCAATGTAATATTTGAAGCCATGAGATGTGGGAATGTAGTCAAATTTTTGCATAGGGAAGCTCTTAAAGATGTCCAATTCAAAGATATTGTCATACCTTCGGGATGGAAAGTTCATCCAATTTTTTCAGCAATTCATCTTGATCCAACCCTTCATCCAAATCCTCAACAATTCAATCCTTGGAGATGGATGGATGACAAAGAAATGAGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTCTGTCCAGGGATTGAGCTTGCCAAACTAGAGATTGCTTTCTTCCTCCATCATCTTGTCCTTAATTATAGAGGAGAAGGAGAAATCCAGCCGTCGGTCACGAAACGTCGTGGGTCTCGGTATTCAGAGGCAGTCAGCCGTCGGTGTGGGTTCCTTCCGATTCAGCACGGCAGTGGGTCTCAGTTGGGAGGCTTCGTGGGTCTCGATTTTGAGGACAATCGGAGTGGGTCTCGGTTTTCTGTCGCCGTGGGTCTCGGGTCAGAGGTCGCCGGAGTGTCGCGATCAGAGGCGGCCTTGTTCAGCAGTGGTTCCCGGTATAGGGGGCTGAAACGAATCTTGTCAGGAAGGGAATACACACTGACGGAAAAATCAGAGAAAACAAGCAGCCGCTGGTCAGAGACGCCTTCACGACGGTTTGGGTCTCGGTTTAGCGTCTATGTGGGTCGCGGAGCAGTGACACCGTGGGTCTCTGTTTCAGTGACGATTTCTTTGCAGCTTCAGGCGACGGTTGTGGCTGTGGTTCACGTAAGGATGATCAAGGAGGAGAGCTTTGAAGTTGATTTAGCAACTGACTGTAGCCCAGAATCTAGTACGAAAAGAAAAAAAAGAAGAAAAAACAAAAAGCAGTTACTGATGGAAGGTGTAGATGTCATGAAAACGAAAGAGGTAGGATCTGTCGGGCTGGGGGAAAGCAACATTAACTCTGATAGTAACAAAGGGAAAAAGAAGAAAAGGAGAAAGAAGAATACTAAACAATCTGTAGAAAACTCTATCAAGGCTGAAGCAGGAGAATATGAAAGTAAAGCAGAGAATTCTACGAAAGAGGACAGTCATCTCTCTGATGGTGGAAGTGAGAAAAATGAAAAGAGGCTAATTGCATTGGAAGATGCTGAGAATGAAAGGGCAGACTGCGTAGTTGGACAAAACTCTGGAGAGAAGATTTTAGAGTCTAAAGATGGAAAATCAGATCAAAGGAATATAAACCTTGATAGTGACAAAGTGAAAAAGAAGAAAAAGAGAAAGAAGAATACTAAACAATCTGTAGAAAATTCTATCAAGGCTGAGGCAGGAGAATATGAAAGTAAAGCAGAGAATTCTACGAAAGAGGACAGTCATTTCTTTGATGGTGGAAGTGAGAAAAATGAAAAGAGGCAAATTGCATTGGAAGAAGCTGAGAATGAAAGGGCAGACAGCATAGTTAGACAAAACTGTGGAGAGAAGATTTTAGAGTCTAACAATGGAAAATCAGATCAAAGGAATATAAAGAGGAAGAAACGGCTCTTAAAGGAAGCTGCAAATGCAGATATGCGTGGAATTTGTTACTTGAGCCGAGTTCCTCCACATATGGATCCTCTGAAACTTCGTCAGATCCTCTCACAGTATGGGGAAATACAGAGAATTTATCTTGCACCCGAGGATGCTGCAAGTCAAATACAACGAAAGCGTGCAGGAGGGTTTCGAGGACAATTTTTCTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCGAAGAAGGTGGCTAATATGTTAAATGGTGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTTTGATCTCTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCCATTCGGGAGCAGAAAATGGCTTTAGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTCGAAAAATCACGCGCGTTGAGTTCCATTGAAGAACGGCTAAAGAAGAAGCAGAAGTTGCGAGAAGGTTCAGAAATGAATTCTGAACTTGCTGATAGCGAGAAACTTCCTAAACTAATCCGCACCTTCCCACAAACACAACCAGTTGCAGATTCTGCAGTACAAAACAAACAGGGATTATCCAAAAATATCCTAGCTGGGGTGTTTGGAAGTTCATAG | 3252 | 43.39 | MISVALINAMEVPASLISSITLALSLAMAAIIICHFVLKLFATAPPNPNLPPGCMGFPFVGETLSFLKPHHSNSMGTFLHHHCSRFGKVFKSHLFGSPAIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGSNSLIIAAGDTHRKLRNVVVSFISWCKSKPTFLRCVDKLSISLMESWRCQTQVLFCKQVKMFALSVMVKELLGIGANESIGSKILEEFETYMKGFVSLPLNLPGTPYSKAVKARKRLSCIVKEMMREGKRRELVEKAAGDDDNFLQVIMSNWKLDDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHQAIRIGKRNGECLNLEDYKQMEFTCNVIFEAMRCGNVVKFLHREALKDVQFKDIVIPSGWKVHPIFSAIHLDPTLHPNPQQFNPWRWMDDKEMSKKVTPFGGGPRLCPGIELAKLEIAFFLHHLVLNYRGEGEIQPSVTKRRGSRYSEAVSRRCGFLPIQHGSGSQLGGFVGLDFEDNRSGSRFSVAVGLGSEVAGVSRSEAALFSSGSRYRGLKRILSGREYTLTEKSEKTSSRWSETPSRRFGSRFSVYVGRGAVTPWVSVSVTISLQLQATVVAVVHVRMIKEESFEVDLATDCSPESSTKRKKRRKNKKQLLMEGVDVMKTKEVGSVGLGESNINSDSNKGKKKKRRKKNTKQSVENSIKAEAGEYESKAENSTKEDSHLSDGGSEKNEKRLIALEDAENERADCVVGQNSGEKILESKDGKSDQRNINLDSDKVKKKKKRKKNTKQSVENSIKAEAGEYESKAENSTKEDSHFFDGGSEKNEKRQIALEEAENERADSIVRQNCGEKILESNNGKSDQRNIKRKKRLLKEAANADMRGICYLSRVPPHMDPLKLRQILSQYGEIQRIYLAPEDAASQIQRKRAGGFRGQFFSEGWVEFTDKRVAKKVANMLNGEQIGGRKRSSFYFDLWNIKYLSKFKWDDLTEETAYKHAIREQKMALEISAAKRERDFYLSKVEKSRALSSIEERLKKKQKLREGSEMNSELADSEKLPKLIRTFPQTQPVADSAVQNKQGLSKNILAGVFGSS | 1083 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 43205763 | 43214510 | + | Lag0029934.1 | Lac8g2547 | 618381 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2547 | 1083 | Pfam | Cytochrome P450 | 51 | 463 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 432 | 441 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac8g2547 | 1083 | MobiDBLite | consensus disorder prediction | 751 | 770 | - | - | |
| Lac8g2547 | 1083 | MobiDBLite | consensus disorder prediction | 750 | 820 | - | - | |
| Lac8g2547 | 1083 | SMART | rrm1_1 | 876 | 960 | IPR000504 | GO:0003723(InterPro) | |
| Lac8g2547 | 1083 | PANTHER | CYTOCHROME P450 26 | 49 | 466 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Lac8g2547 | 1083 | CDD | RRM_ABT1_like | 875 | 972 | IPR034353 | - | |
| Lac8g2547 | 1083 | CDD | CYP90-like | 82 | 463 | - | - | |
| Lac8g2547 | 1083 | MobiDBLite | consensus disorder prediction | 627 | 724 | - | - | |
| Lac8g2547 | 1083 | MobiDBLite | consensus disorder prediction | 792 | 820 | - | - | |
| Lac8g2547 | 1083 | FunFam | Cytochrome P450 724B1 | 46 | 471 | - | - | |
| Lac8g2547 | 1083 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 875 | 957 | IPR000504 | GO:0003723(InterPro) | |
| Lac8g2547 | 1083 | SUPERFAMILY | RNA-binding domain, RBD | 870 | 957 | IPR035979 | GO:0003676(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | E-class P450 group I signature | 397 | 421 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | E-class P450 group I signature | 83 | 102 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | SUPERFAMILY | Cytochrome P450 | 47 | 461 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | P450 superfamily signature | 439 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac8g2547 | 1083 | MobiDBLite | consensus disorder prediction | 698 | 724 | - | - | |
| Lac8g2547 | 1083 | Pfam | RNA recognition motif | 878 | 957 | IPR000504 | GO:0003723(InterPro) | |
| Lac8g2547 | 1083 | Gene3D | - | 836 | 960 | IPR012677 | - | |
| Lac8g2547 | 1083 | Gene3D | Cytochrome P450 | 42 | 478 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2963 | Lac-Chr1:50416042 | Lac8g2547 | Lac-Chr8:43205763 | 1.50E-70 | dispersed | |
| Lac5g2065 | Lac-Chr5:39155217 | Lac8g2547 | Lac-Chr8:43205763 | 1.80E-85 | dispersed | |
| Lac8g2547 | Lac-Chr8:43205763 | Lac10g0507 | Lac-Chr10:3875281 | 4.60E-11 | dispersed | |
| Lac10g0502 | Lac-Chr10:3853381 | Lac8g2547 | Lac-Chr8:43205763 | 3.80E-13 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2547 | K12639 | - | csv:101215045 | 693.73 |