Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2560 ATGGGGTCCGGTAATGGGTTATGTTCAACAGAGTTTGATTTGGATGCTAAGTGGCTTGTCGATCCGAAGCAAATCTTTGTTGGGCCAAGGATTGGGGAGGGCGCGCATGGCAAAGTGCATAAGGGGAAATACAAAGACCAAAATGTTGCTATTAAAATAATTCGGAGAGGTGAAACTCCAGAAGAAATTGCAAAAACTGAGGCACGCTTTGCTCGAGAGGTTGCAATGTTATCCAAAGTTCAGCACAAAAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACTGAGCTTCTTTTAGGCGGTACATTACGAAAGTACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCACGAGGCAGCTGGCTTTGCACTTGATATTGCACGTGCAATGGAATGCCTGCATTCCCATGGGATCATCCACCGCGATCTCAAACCTGAGAATTTGATCTTGACCGGAGACCACAAAACTGTTAAGCTTACAGACTTTGGTCTGGCTAGAGAAGAGTCGGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTTTACAGTACAGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCACAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTGTCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCAGCGTATGCAGCTGCTTTTAAGAATTTACGTCCGAGCGCTGAGAACCTCCCAGAAGATTTGGCCCCGATTATAACTTCCTGTTGGTCGGAGGATCCGAACGCTCGGCCTAACTTCAGCCAAATCATACAGATACTTTTGAAATATCTATCCACCATTCCACAACCGGAGTATGTTGCACCACCAATAATGCACCCGCCTGAAAATGCAGTGCTGCCACCAGAGTCTCCTGGAACAAGTTCTTTGATGGCAGCCACAAGGCGTGGCACCGGGGAAGTCCCGAACGGTGGGATCGAAGAGAAACCGAGCAGTTTCTTCTCCTGTTTCACTGGTAACTGTTACTGA 1062 46.05 MGSGNGLCSTEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQNVAIKIIRRGETPEEIAKTEARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLHEAAGFALDIARAMECLHSHGIIHRDLKPENLILTGDHKTVKLTDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIVQNKLPFEGMSNLQAAYAAAFKNLRPSAENLPEDLAPIITSCWSEDPNARPNFSQIIQILLKYLSTIPQPEYVAPPIMHPPENAVLPPESPGTSSLMAATRRGTGEVPNGGIEEKPSSFFSCFTGNCY 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43304097 43307003 - Lag0029947.1 Lac8g2560 618394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2560 353 PRINTS Tyrosine kinase catalytic domain signature 101 114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 PRINTS Tyrosine kinase catalytic domain signature 139 157 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 PRINTS Tyrosine kinase catalytic domain signature 213 235 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 PRINTS Tyrosine kinase catalytic domain signature 256 278 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 SMART serkin_6 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 FunFam Kinase suppressor of Ras 1 14 104 - -
Lac8g2560 353 SUPERFAMILY Protein kinase-like (PK-like) 16 315 IPR011009 -
Lac8g2560 353 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Lac8g2560 353 PIRSF TyrPK_CSF1-R 9 124 - -
Lac8g2560 353 PIRSF TyrPK_CSF1-R 114 315 - -
Lac8g2560 353 ProSiteProfiles Protein kinase domain profile. 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Lac8g2560 353 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524(InterPro)
Lac8g2560 353 PANTHER SERINE-THREONINE PROTEIN KINASE 20 286 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac8g2560 353 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2560 353 CDD STKc_MAP3K-like 31 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0072 Lac-Chr5:625725 Lac8g2560 Lac-Chr8:43304097 5.70E-56 dispersed
Lac8g0205 Lac-Chr8:2314970 Lac8g2560 Lac-Chr8:43304097 4.20E-155 dispersed
Lac8g1700 Lac-Chr8:35179569 Lac8g2560 Lac-Chr8:43304097 9.10E-51 dispersed
Lac8g2560 Lac-Chr8:43304097 Lac11g0955 Lac-Chr11:10528968 2.60E-35 dispersed
Lac8g2560 Lac-Chr8:43304097 Lac1g3332 Lac-Chr1:53046788 2.10E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86393 PF07714 PK_Tyr_Ser-Thr 5.50E-58 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2560 - - - 0.0