Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2566 ATGGCTTCTTCAAGCTACTCAAACTCTCCATGTGCAGCATGCAAGTTCCTAAGAAGAAAATGCCTAGCAGACTGCATATTTGCGCCCTACTTTCCACCTGAAGAGCCAACCAAATTTGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCAATGAGGTCCAGCCCCATCAGCGCGAGGACGCCGTGAATTCTCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTACGGCTGCGTCGGGGCAATCTCCGTTCTACAACGACAAGTCATTCGCCTCCAGAAGGAGCTCGATGCTACGAATGCTGATTTGGTTCGATATGCCAGCGGGGGCGGGCGCCCCTCTCGCAATTTGGAAGAAGGGCAACCGCGGCCGCGACCGGGCGACATCATTCCGGTGTATGTTTTGTTTCTCCCTTGGTTCCTATTACAAAATTAG 456 53.07 MASSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYASGGGRPSRNLEEGQPRPRPGDIIPVYVLFLPWFLLQN 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43367021 43367672 + Lag0029953.1 Lac8g2566 618400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2566 151 Coils Coil 89 109 - -
Lac8g2566 151 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Lac8g2566 151 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Lac8g2566 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2566 Lac-Chr8:43367021 Lac9g0565 Lac-Chr9:10928658 5.60E-40 dispersed
Lac10g0481 Lac-Chr10:3716999 Lac8g2566 Lac-Chr8:43367021 2.80E-45 wgd
Lac8g0240 Lac-Chr8:2655989 Lac8g2566 Lac-Chr8:43367021 4.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24344 PF03195 LOB 7.50E-42 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2566 - - - 0.0