Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2577 ATGGCAGAAATCCCGACCCTTCTTCTCCCTACCCCACCCTCACGATCTCCATTCTGCCTCGTCTTTTCATCGCAACATCCCCTCTCCGGCCGCCGCCGTTCCTGCCGCACCTCCTACCGCGTGAAACTCGTGTTTCACATGCCAAAAAACGACGTCGTGTCCTCATTCTTCATTCCTTCCTTCTTCTTCTACTCTCTCTCTCTCTCCGGGAGCTATTGGCCTTCGAGAGAGATGCAGAGTTCTGTGTTGGCTCTGGCCATGTCTTTTTCCCCTAATACTACTGCTAGGGCTACTGATATTCCATTGCCTCTACTTCCATGCCGAATTCGAAGCCCTAATTTCCCTCACTTTTCGCACATTGTTCCGTTTCGTTCTCGCGGAGGTTTGATCTCATGGCGCCCTTCCTTCTCCTCCTCTTCGATCTCTGTTTCTTCTCCCGGATTCAGTCCGAGGCTCGAGAAATTCACCGTAATGGCGGCTTCCGTGCCGGAGAGCGCCGGCGAGGCGGTGGAATCGGTCGATTTCATTAACAATGTGCGGCTTGGTGCAATGTTTGGTGTTTGGTACCTTTTGAATATCTACTACAACATTTTCAACAAACAGGTTCTGAAAGCCTTTCCCTTTCCAACTACGGTGACAGCTTTTCAGTTCGGCTGTGGGACGCTGATAGTAAGCTTAATGTGGGCTCTTAATTTTCATCCCAAACCCAAGATCAATCGATCTCAGTTTTCAGCCATTCTTCCGCTGGCTGTAGCGCACACAATGGGAAACATATTGACCAATGTGAGTCTTGGGAGAGTTGCGGTTTCATTCACTCACACCATCAAAGCAATGGAGCCATTTTTCACTGTTCTGCTCTCTGCTTTGTTTTTGGCTGAGAGGCCCACGTTGTGGGTTGTTCTTTCTCTCGTACCCGTTGTAGGAGGAGTGGCACTCGCATCTTTTACTGAAGCCTCATTTAATTGGATTGGCTTCAGCAGTGCCATGGCTTCAAATCTCACAAATCAATCTCGTAATATCTTCAGCAAAAAGTTCATGGTTCACAAAGAGGCATTGGACACTATCAATCTCTTCTCTGTAATTACTATCATTTCGTTTATCTTCCTGGTTCCCTCGGCTCTTCTCCTTGAAGGCACTAAATTAAGTCCTTCATACCTGCAATCAGCTGCAAATCAAGGGTTGAATGTCAGAGAGCTAGGCATTAGGTTGCTTCTTTCTGGCATCTGTTTTCATAGTTATCAGCAGGTTTCTTATTCAATACTACAGGAAATTTCACCAGTGACCCATGCAGTAGGAAATTCTCTGAAGCGTGTGGTGGTCATAGTATCCTCAGTTATTTTCTTCCAAACAGCCGTTTCACCTCTAAACGCCCTAGGAACTGGCATAGCTCTGATGGGAGTTTTCTTGTATTCAAGGGCAAAGCGTATGAAGCCAAAGCTGAAGGCTGTGTAA 1452 47.04 MAEIPTLLLPTPPSRSPFCLVFSSQHPLSGRRRSCRTSYRVKLVFHMPKNDVVSSFFIPSFFFYSLSLSGSYWPSREMQSSVLALAMSFSPNTTARATDIPLPLLPCRIRSPNFPHFSHIVPFRSRGGLISWRPSFSSSSISVSSPGFSPRLEKFTVMAASVPESAGEAVESVDFINNVRLGAMFGVWYLLNIYYNIFNKQVLKAFPFPTTVTAFQFGCGTLIVSLMWALNFHPKPKINRSQFSAILPLAVAHTMGNILTNVSLGRVAVSFTHTIKAMEPFFTVLLSALFLAERPTLWVVLSLVPVVGGVALASFTEASFNWIGFSSAMASNLTNQSRNIFSKKFMVHKEALDTINLFSVITIISFIFLVPSALLLEGTKLSPSYLQSAANQGLNVRELGIRLLLSGICFHSYQQVSYSILQEISPVTHAVGNSLKRVVVIVSSVIFFQTAVSPLNALGTGIALMGVFLYSRAKRMKPKLKAV 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43434270 43441532 + Lag0029964.1 Lac8g2577 618411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2577 483 PANTHER SOLUTE CARRIER FAMILY 35 178 474 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Lac8g2577 483 Pfam Triose-phosphate Transporter family 180 471 IPR004853 -
Lac8g2577 483 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 181 480 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lac8g2577 483 SUPERFAMILY Multidrug resistance efflux transporter EmrE 395 476 - -
Lac8g2577 483 SUPERFAMILY Multidrug resistance efflux transporter EmrE 223 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0352 Lac-Chr7:2718983 Lac8g2577 Lac-Chr8:43434270 1.90E-66 dispersed
Lac8g2577 Lac-Chr8:43434270 Lac8g2906 Lac-Chr8:46193163 2.30E-18 dispersed
Lac10g0453 Lac-Chr10:3570935 Lac8g2577 Lac-Chr8:43434270 1.30E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2577 K15283 - csv:101217436 627.476