Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2588 ATGGATAATTCTTCAGAAAAAAGATATCCAGTGAATGCAAAGGATTATAACTTACGTGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTGAATGAGGTTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACCATGACTTTGATTGATCATCCGAATTTATTAAGAGCACATTGTTCCTTCACAGCCGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGTCTTCATATTATGAAATCTGCTTATCCTGAAGGTTTTGACGAGCCTGTCATTGCCACTCTATTGCGGGAGGTTCTGAAAGCTCTCGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACTGTCAAGTTAGCTGATTTTGGAGTCTCAGCTTGCATGTTCGATACGGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGATTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAGCATGCCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGTTTTAAGAAGCTCAAGGTAAAAGAGGCTGATCTTTTGGGGCAGAACAAGGCTTTATACGGGGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTCGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAATATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAAGATTAATGATTTTAGCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAATCATCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTATAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATCATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACATTTCATCTGTTGAGGATACATCAGATGGAACTGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCGGCAGAGCTCAGTCCAAAGGGTCCTATGACGGGATCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACTTCCCTGAACCTTACGCCTGCTCTACTTCTCCCATCGATGCAATGCATTTTGCAGCAGAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACGAACCCCAGTGACCTTCTGCAGATACCACCGACTTCCTTGAGGGAAAGAGAATTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATAATCTTGTTGAGGAATTGGAGAAGCAGAAGTCGAAAAATGCCGAGGTTTTGTATCACATTTGA 1989 42.03 MDNSSEKRYPVNAKDYNLREEVGEGVSATVYKALCIPLNEVVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYPEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKVKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNKINDFSFPVEGSSLERLNHPTAAASQEDGFSDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSIRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNISSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQMTGKNPDVSETNPSDLLQIPPTSLRERELQSQVVHLQQRIDNLVEELEKQKSKNAEVLYHI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43528216 43538990 - Lag0029975.1 Lac8g2588 618422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2588 662 Gene3D Transferase(Phosphotransferase) domain 1 97 306 - -
Lac8g2588 662 Coils Coil 627 654 - -
Lac8g2588 662 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2588 662 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Lac8g2588 662 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lac8g2588 662 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Lac8g2588 662 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Lac8g2588 662 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Lac8g2588 662 MobiDBLite consensus disorder prediction 449 464 - -
Lac8g2588 662 CDD STKc_OSR1_SPAK 14 277 - -
Lac8g2588 662 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Lac8g2588 662 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2588 662 MobiDBLite consensus disorder prediction 437 464 - -
Lac8g2588 662 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0581 Lac-Chr11:5908676 Lac8g2588 Lac-Chr8:43528216 3.30E-153 dispersed
Lac2g1245 Lac-Chr2:10155119 Lac8g2588 Lac-Chr8:43528216 1.00E-56 dispersed
Lac5g0129 Lac-Chr5:1050954 Lac8g2588 Lac-Chr8:43528216 9.90E-128 dispersed
Lac7g0640 Lac-Chr7:5140768 Lac8g2588 Lac-Chr8:43528216 1.10E-93 dispersed
Lac8g2588 Lac-Chr8:43528216 Lac1g3541 Lac-Chr1:54641919 1.50E-28 dispersed
Lac8g2588 Lac-Chr8:43528216 Lac5g2947 Lac-Chr5:47502179 7.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86394 PF00069 Pkinase 1.20E-59 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2588 K08835 - csv:101205102 1270.76