Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2588 ATGGATAATTCTTCAGAAAAAAGATATCCAGTGAATGCAAAGGATTATAACTTACGTGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTGAATGAGGTTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGGCGAGAGGTTCAAACCATGACTTTGATTGATCATCCGAATTTATTAAGAGCACATTGTTCCTTCACAGCCGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGTCTTCATATTATGAAATCTGCTTATCCTGAAGGTTTTGACGAGCCTGTCATTGCCACTCTATTGCGGGAGGTTCTGAAAGCTCTCGTTTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACTGTCAAGTTAGCTGATTTTGGAGTCTCAGCTTGCATGTTCGATACGGGAGATAGGCAACGCTCAAGAAACACATTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAATACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTTGATTATGAAAGAGATAAGAGATTTTCTAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAGCATGCCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGATGGCCTTGATCCATTAGGGGAACGTTTTAAGAAGCTCAAGGTAAAAGAGGCTGATCTTTTGGGGCAGAACAAGGCTTTATACGGGGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTCGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAATATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAAGATTAATGATTTTAGCTTTCCGGTAGAGGGTTCATCCCTTGAAAGGCTGAATCATCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTCCCTATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTATAAGGCCAGTGGATAGAGAAAATGGAAGAACCGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGTGGTTCACTAATTTCTGACAATGCTGTTTCTCCTAAAAAGATCATTGTAGATGGTGATAGGGACTATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACATTTCATCTGTTGAGGATACATCAGATGGAACTGTTGTTCAACGTAAGGGGCGGTTTAAAGTTACTTCGGCAGAGCTCAGTCCAAAGGGTCCTATGACGGGATCATTTAGCCCAGTCTGTGGAGGGACAATAAGTCCAACTTCCCTGAACCTTACGCCTGCTCTACTTCTCCCATCGATGCAATGCATTTTGCAGCAGAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACGAACCCCAGTGACCTTCTGCAGATACCACCGACTTCCTTGAGGGAAAGAGAATTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATAATCTTGTTGAGGAATTGGAGAAGCAGAAGTCGAAAAATGCCGAGGTTTTGTATCACATTTGA 1989 42.03 MDNSSEKRYPVNAKDYNLREEVGEGVSATVYKALCIPLNEVVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSAYPEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLARTILDGLDPLGERFKKLKVKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNKINDFSFPVEGSSLERLNHPTAAASQEDGFSDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSIRPVDRENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPSERNYSGPLLYRQKRDTNNISSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQMTGKNPDVSETNPSDLLQIPPTSLRERELQSQVVHLQQRIDNLVEELEKQKSKNAEVLYHI 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43528216 43538990 - Lag0029975.1 Lac8g2588 618422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2588 662 Gene3D Transferase(Phosphotransferase) domain 1 97 306 - -
Lac8g2588 662 Coils Coil 627 654 - -
Lac8g2588 662 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2588 662 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Lac8g2588 662 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lac8g2588 662 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Lac8g2588 662 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Lac8g2588 662 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Lac8g2588 662 MobiDBLite consensus disorder prediction 449 464 - -
Lac8g2588 662 CDD STKc_OSR1_SPAK 14 277 - -
Lac8g2588 662 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Lac8g2588 662 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2588 662 MobiDBLite consensus disorder prediction 437 464 - -
Lac8g2588 662 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2588 K08835 - - csv:101205102 1270.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0581 Lac-Chr11:5908676 Lac8g2588 Lac-Chr8:43528216 3.30E-153 dispersed
Lac2g1245 Lac-Chr2:10155119 Lac8g2588 Lac-Chr8:43528216 1.00E-56 dispersed
Lac5g0129 Lac-Chr5:1050954 Lac8g2588 Lac-Chr8:43528216 9.90E-128 dispersed
Lac7g0640 Lac-Chr7:5140768 Lac8g2588 Lac-Chr8:43528216 1.10E-93 dispersed
Lac8g2588 Lac-Chr8:43528216 Lac1g3541 Lac-Chr1:54641919 1.50E-28 dispersed
Lac8g2588 Lac-Chr8:43528216 Lac5g2947 Lac-Chr5:47502179 7.40E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1245 . 1 694 MAP Kinase Kinase Kinase Kinase AT1G53165 62.6 7.8e-222 767.7
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.3 2.9e-67 254.2
Lac2g1245 . 1 693 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 1.7e-232 803.1
Lac13g0383 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.3e-67 255.4
Lac13g0383 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.4 2.8e-239 825.9
Lac2g1245 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 4.5e-67 253.8
Lac8g2588 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 67.6 7.6e-254 874.0
Lac7g0640 . 32 386 MAP Kinase Kinase Kinase Kinase AT5G14720 51.0 1.0e-96 352.1
Lac5g0129 . 7 677 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 5.7e-223 771.5
Lac5g0129 . 11 677 MAP Kinase Kinase Kinase Kinase AT4G10730 61.6 2.7e-222 769.2
Lac5g0129 . 5 339 MAP Kinase Kinase Kinase Kinase AT1G70430 51.4 1.3e-100 364.8
Lac11g0581 . 1 677 MAP Kinase Kinase Kinase Kinase AT1G79640 59.5 8.6e-218 754.2
Lac8g2588 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 4.2e-105 379.4
Lac11g0581 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.2e-87 319.3
Lac5g0129 . 17 251 MAP Kinase Kinase Kinase Kinase AT1G23700 54.2 1.2e-62 238.4
Lac7g0640 . 32 492 MAP Kinase Kinase Kinase Kinase AT4G14480 57.4 1.9e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86394 PF00069 Pkinase 1.20E-59 CL0016 Lac PK