Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2595 ATGGATCATTCACTAGAGACTTCCAGGCATAAGTGTGCAGCTTGCTTCAGGCAATTCAACAAGATAGAGCACTTGGTAGATCATATGAGGACCTCTTTTCACTCAGTTCATGAACCCTTTTGTGCCATTTGCAAGAAACACTGTAGATCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCGCTCCCGAAGCAAGAATGCAAAAGCATCTTCGCTACGAGGGGATGCAAGTTTTGCTTGGCCATCCTTGACAATTCTTATTCACAAAGACTCCATCAAGAAAGATGCCAATTCTCGGGAGTAAATTCAGGCTTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCATCGTCGACAACGGAAGAACTCGAGGCTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGATCGCTGGACATCTGCGCCAAGGTCTGCCTTGTTGATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTATGAGACGACTGGGATTCGTCCAGAACACTTTAGGGATGCAATGTTGCTAAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAAAAAGCTAGGGTTCTTGTGGGTCACTGCGTGGAAGAGGATCTCAAACGTCTTCAAATCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTTGACATTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTGTGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAGCAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAGGATTTGA 1035 43.57 MDHSLETSRHKCAACFRQFNKIEHLVDHMRTSFHSVHEPFCAICKKHCRSLDSLREHLIGPLPKQECKSIFATRGCKFCLAILDNSYSQRLHQERCQFSGVNSGFLARFANLGIRDGSTIVDNGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHCVEEDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43596436 43598548 + Lag0029982.1 Lac8g2595 618429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2595 344 SUPERFAMILY Ribonuclease H-like 146 292 IPR012337 -
Lac8g2595 344 Gene3D - 128 307 IPR036397 GO:0003676(InterPro)
Lac8g2595 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Lac8g2595 344 Pfam Exonuclease 147 269 IPR013520 -
Lac8g2595 344 CDD REX4_like 132 287 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Lac8g2595 344 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 342 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Lac8g2595 344 Gene3D Classic Zinc Finger 1 60 - -
Lac8g2595 344 SMART exoiiiendus 130 295 IPR013520 -
Lac8g2595 344 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2724 Lac-Chr11:43029201 Lac8g2595 Lac-Chr8:43596436 6.90E-15 dispersed
Lac8g2595 Lac-Chr8:43596436 Lac8g2596 Lac-Chr8:43605910 2.30E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2595 - - - 0.0