Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2596 ATGGATCACTCGTCAGAGACGTCGAGGCACAAGTGTGCAGCTTGCTTCAGGCAGTTCAACAAGATAGAGCACTTGGTAGAACATATGAGAATCTCGTTTCACTCAGTTCATGAGCCAACTTGCTCCATTTGCCACAAACACTGCAGATCCTTTGAATCTCTCAGAGAACATCTTAGCGGGCCACTGCCAAAGCAAGAATGCAACAACATATTCAGCACAAGAGGATGCAAAATTTGCTTAGCCATCTTTGAAAGCCCTCACATCCTCAGGATTCACCAAGAAAGATGTCAACTAATTTGCCCAGTAAATTCTGTATGTATTGTATTCTGTCAAATTAATATTGAATTTCATCATCATATAGCCAGTAATTCATTTAATTATAATTTGGGAATGATTTGTGAGAAGTTGATGATGGAGAATGGCCGCACAAACACAAAGCGCAACGAAGCAGCGGCGTTGGCTTGCAGAATGGTCGGCGCTGGCAGCGATGGGTCGCTAGATGTCTGCGCCAGCCTCTGCCTTATTGATCAAAATCAAACCATCATTTTCTCCACTTATGTTAAGCCAACGCTTCCCGTCACAAACTATAGGTTCGAATCCACGGGTATTCGTCCCGAATACTTGAGAGACGCACCGCCATTGAAGCAAGTTCAGAAGAAAATTCAAGAGTTTCTCTGCAATGGAGAACAAATGTGGAAGATTCGACCTGGAGGTGGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTAGAAGATGACCTTAAACGCTTGCAAATTGACTATCCTCCAATCATGATAAGGGATACAGCTAAATATCCACCATTGATGAAAACAAGCAAGCTCAGCAATTCTCTCCACTATCTAACACAAGCATATCTTGGGTACGATATTCAAAATGGCAACAAAGACCCTTATGAAGATTGTGTTGCGACGATGAAGTTGTACATGAGAATGAGATCCCAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAATAAAAATAATTTTGCAATTTGGAAGCAATATGAACTGGAGAGGATGAGCCCAGAACAGATGTTGGAAATCTCAAGATCTGATTACTATTGTTGGTGCTTGGACTCCAAGGTTAATTAG 1125 42.13 MDHSSETSRHKCAACFRQFNKIEHLVEHMRISFHSVHEPTCSICHKHCRSFESLREHLSGPLPKQECNNIFSTRGCKICLAIFESPHILRIHQERCQLICPVNSVCIVFCQINIEFHHHIASNSFNYNLGMICEKLMMENGRTNTKRNEAAALACRMVGAGSDGSLDVCASLCLIDQNQTIIFSTYVKPTLPVTNYRFESTGIRPEYLRDAPPLKQVQKKIQEFLCNGEQMWKIRPGGGGKARILVGHGLEDDLKRLQIDYPPIMIRDTAKYPPLMKTSKLSNSLHYLTQAYLGYDIQNGNKDPYEDCVATMKLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQYELERMSPEQMLEISRSDYYCWCLDSKVN 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43605910 43609775 + Lag0029983.1 Lac8g2596 618430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2596 374 Pfam Exonuclease 176 315 IPR013520 -
Lac8g2596 374 CDD REX4_like 152 315 IPR037431 GO:0006364(InterPro)|GO:0008408(InterPro)
Lac8g2596 374 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 4 371 IPR047021 GO:0004527(InterPro)|GO:0004527(PANTHER)|GO:0005634(PANTHER)
Lac8g2596 374 SUPERFAMILY Ribonuclease H-like 163 320 IPR012337 -
Lac8g2596 374 FunFam RNA exonuclease 4 146 334 - -
Lac8g2596 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Lac8g2596 374 SMART exoiiiendus 149 324 IPR013520 -
Lac8g2596 374 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Lac8g2596 374 Gene3D - 144 332 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2725 Lac-Chr11:43040131 Lac8g2596 Lac-Chr8:43605910 1.70E-74 dispersed
Lac8g2595 Lac-Chr8:43596436 Lac8g2596 Lac-Chr8:43605910 2.30E-142 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2596 - - - 0.0