Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2600 ATGATGTCGGACGGTTTGATCTTTAACCGGTCTCCAGGTCACGGCAACATGCTGTTTTTCGGGAGTGGTGATTCCATTCTTCGAGGACCGAGGTTCACGATGGGGATGGATGAAATTTCAAAGAAGCGACCCTTTTTCACCTCTCCGGATGACCTGTTCGACGACGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATAAGTTTTGAGGCGGAAAACAAACTGGAACCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTATGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCGTCCTTTCAAGCTAAGAAGTCCGAGCCAATTTTGGAAGATCAAATCCTTGTTCCTGTTGTGCAACATAGCATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGACTCGTACCTCCTGAGCAATGACTATGATGGCTGCGTTTTTCCAGTTCTCGGAGTGAACTCGGAGGAGGAGGACGGGAGTGACGATGGTCAGGGTTACTTCTCAGATGTTTATACAACAGCAGATCAGCAGACTCATGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA 837 48.86 MMSDGLIFNRSPGHGNMLFFGSGDSILRGPRFTMGMDEISKKRPFFTSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVFPVLGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43637896 43640005 + Lag0029987.1 Lac8g2600 618434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2600 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Lac8g2600 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Lac8g2600 278 Coils Coil 140 167 - -
Lac8g2600 278 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Lac8g2600 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Lac8g2600 278 Gene3D - 58 126 - -
Lac8g2600 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 212 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac8g2600 278 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Lac8g2600 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2600 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Lac8g2600 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
Lac8g2600 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac8g2600 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2067 Lac-Chr5:39191312 Lac8g2600 Lac-Chr8:43637896 4.00E-18 dispersed
Lac8g0332 Lac-Chr8:4019362 Lac8g2600 Lac-Chr8:43637896 9.50E-65 dispersed
Lac8g2600 Lac-Chr8:43637896 Lac8g2671 Lac-Chr8:44187497 1.80E-20 dispersed
Lac8g2600 Lac-Chr8:43637896 Lac10g0375 Lac-Chr10:2929338 8.20E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24347 PF00046 Homeodomain 4.60E-17 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2600 K09338 - csv:101210106 482.256