Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2600 | ATGATGTCGGACGGTTTGATCTTTAACCGGTCTCCAGGTCACGGCAACATGCTGTTTTTCGGGAGTGGTGATTCCATTCTTCGAGGACCGAGGTTCACGATGGGGATGGATGAAATTTCAAAGAAGCGACCCTTTTTCACCTCTCCGGATGACCTGTTCGACGACGACTACTACGATGACCAGCCACCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATAAGTTTTGAGGCGGAAAACAAACTGGAACCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCTTTTCGTTCTAGCTATGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGCCGAGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCGTCCTTTCAAGCTAAGAAGTCCGAGCCAATTTTGGAAGATCAAATCCTTGTTCCTGTTGTGCAACATAGCATGAAGATTGAGGACCACCATAGTTGCAGGAGCAATGGAAGTGCCGTGCTGGACGAGGACGGTCCTCAACTCTTAGACAGTGGGGACTCGTACCTCCTGAGCAATGACTATGATGGCTGCGTTTTTCCAGTTCTCGGAGTGAACTCGGAGGAGGAGGACGGGAGTGACGATGGTCAGGGTTACTTCTCAGATGTTTATACAACAGCAGATCAGCAGACTCATGAGGGAGAGCCTTTGACCTGGTGGGACTGGACGTCGTAA | 837 | 48.86 | MMSDGLIFNRSPGHGNMLFFGSGDSILRGPRFTMGMDEISKKRPFFTSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVASLTEKLQAKEVVESSFQAKKSEPILEDQILVPVVQHSMKIEDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVFPVLGVNSEEEDGSDDGQGYFSDVYTTADQQTHEGEPLTWWDWTS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 43637896 | 43640005 | + | Lag0029987.1 | Lac8g2600 | 618434 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2600 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 60 | 120 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2600 | 278 | SMART | HOX_1 | 63 | 124 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2600 | 278 | Coils | Coil | 140 | 167 | - | - | |
Lac8g2600 | 278 | SUPERFAMILY | Homeodomain-like | 51 | 122 | IPR009057 | - | |
Lac8g2600 | 278 | Pfam | Homeodomain | 65 | 118 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2600 | 278 | Gene3D | - | 58 | 126 | - | - | |
Lac8g2600 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 40 | 212 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lac8g2600 | 278 | FunFam | Homeobox-leucine zipper protein HAT5 | 58 | 122 | - | - | |
Lac8g2600 | 278 | Pfam | Homeobox associated leucine zipper | 120 | 162 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lac8g2600 | 278 | PRINTS | Lambda-repressor HTH signature | 91 | 100 | IPR000047 | GO:0003677(InterPro) | |
Lac8g2600 | 278 | PRINTS | Lambda-repressor HTH signature | 100 | 116 | IPR000047 | GO:0003677(InterPro) | |
Lac8g2600 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 95 | 118 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac8g2600 | 278 | CDD | homeodomain | 65 | 121 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2067 | Lac-Chr5:39191312 | Lac8g2600 | Lac-Chr8:43637896 | 4.00E-18 | dispersed | |
Lac8g0332 | Lac-Chr8:4019362 | Lac8g2600 | Lac-Chr8:43637896 | 9.50E-65 | dispersed | |
Lac8g2600 | Lac-Chr8:43637896 | Lac8g2671 | Lac-Chr8:44187497 | 1.80E-20 | dispersed | |
Lac8g2600 | Lac-Chr8:43637896 | Lac10g0375 | Lac-Chr10:2929338 | 8.20E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24347 | PF00046 | Homeodomain | 4.60E-17 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2600 | K09338 | - | csv:101210106 | 482.256 |