Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2613 ATGGCTCCGAGCTCTGTTGTGGTCACAATTGAGAAGCATAACAGTTTCCCTTTAGTGGAAATCAATGCCTCTGATTCTCTGTTGCTTCCTGAGAAGCAGAAGGCCACCAGTCCCAAGCAGCTCACTTGGGTTCTTCTTCTCAAAGCCCACAGAGCTCTGTTTTTCTTCTCGTGGTTGGCTATGACTACGAAGGCTGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGAGGGAAGTTGTATAGATTCATTAAAGCTTTTCTCGCTATTTCAATTGCGGGTTTGATCGTTGAAGTTGTTGCCCATTTCAAGAAGTGGAATCTGCAAATGATTCAGCCATTGGAGCTCGAGGTTCATGGGCTTGTCCAATGGTTTTATGTCTCGTGGCTTGCGTTTCGAGTTGATTACATTGCTCCACTGGTGTTAATGCTTTCTAAATTCTGCACTGTTCTGTTCCTGATCCAATCTCTCGATCGCCTTGTTCTCTGCGTTGGCTGCTTTTGGATCAAATACAAGAGAATCAAGCCCACGATTCAAGATGATGCTTATGATTTGGAAGATGCTTCAACTTTTCCGATGGTTCTTGTTCAAATCCCAATGTGCAATGAGAGAGAGGTTTATGCACAATCCATTGCTGCTGCTTGTCAGCTTGATTGGCCAAGGAATCGGATTTTGATTCAAGTTCTGGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTGTCATGGAATGAAAAGGGTGTTAATATTGTTTACAGACATAGATTGATCCGAACTGGGTATAAAGCTGGGAATCTCAAGTCTGCTATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACTAACGATCCCCCATTTCAAGGGAAATCCTCAACTGGGACTTGTCCAAGCTCGGTGGGCGTTTGTTAACAAGGACGAAAACTTACTTACAAGACTCCAAAACATCAACTTGTGCTTTCACTTTGAAGTGGAGCAGCAAGTTAATGGTGTTTTCCTGAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAACGGAAGCGCTTGAGGAATCCGGTGGCTGGCTCGAGCGGACGACCGTAGAAGATATGGACATCGCAGTTCGAGCTCACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTGTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTGCCTTCGATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCCTGAGAAAACTCATCCTTCCCTTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTCATTCCAGAAGCAGAATTGCCTCTCTGGGTGATCTGCTACATCCCAGTCTTCATGTCATTGCTAAACATTCTTCCATCCCCCAAATCCTTCCCCTTCTTGATCCCATACCTCTTGTTTGAGAACACCATGTCTGTCACAAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGATCGTGACAAAGAAGACAGGACGATCGTCTGAATCCGACTTCTTAGCATTCGCCGAGCGAGAGTCGAAAACGACGAACGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGCTGGAGTTGTTGAGCAAATTGAACCAACAAGAGAAGCAGCAAAAGGGTTCAAACTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCTCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTGCTGTCAGCACATGGAGTTCACTTCTATTTCTTGCTCTTCCAAGGTTTGTCATTCCTGGTTGTGGGTTTGGACTTGATTGGTGAGCAAATGAACTGA 2010 43.73 MAPSSVVVTIEKHNSFPLVEINASDSLLLPEKQKATSPKQLTWVLLLKAHRALFFFSWLAMTTKAVFASVKKRIAHADINEEDSKSRGKLYRFIKAFLAISIAGLIVEVVAHFKKWNLQMIQPLELEVHGLVQWFYVSWLAFRVDYIAPLVLMLSKFCTVLFLIQSLDRLVLCVGCFWIKYKRIKPTIQDDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACQLDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTIPHFKGNPQLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRTEALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLAFAERESKTTNEEKILRRHSESGLELLSKLNQQEKQQKGSNSKKKRNKVYRKELALAFLLLTASARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43718309 43720603 - Lag0030000.1 Lac8g2613 618447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2613 669 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 504 IPR029044 -
Lac8g2613 669 Pfam Glycosyl transferase family group 2 296 502 IPR001173 -
Lac8g2613 669 FunFam probable xyloglucan glycosyltransferase 5 196 420 - -
Lac8g2613 669 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 194 421 IPR029044 -
Lac8g2613 669 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 118 668 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2613 K20887 - - csv:101208151 1234.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0693 Lac-Chr2:5210373 Lac8g2613 Lac-Chr8:43718309 4.40E-273 dispersed
Lac6g0224 Lac-Chr6:1786030 Lac8g2613 Lac-Chr8:43718309 3.20E-239 dispersed
Lac8g2613 Lac-Chr8:43718309 Lac9g2668 Lac-Chr9:45034125 2.70E-110 dispersed
Lac8g2613 Lac-Chr8:43718309 Lac2g0428 Lac-Chr2:3122723 7.10E-244 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g1614 . 206 366 REM Transcription Factor Family AT1G49480 72.0 1.3e-56 217.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac2g0693 . 1 695 REM Transcription Factor Family AT2G24630 78.4 0.0e+00 1102.8
Lac8g2613 . 6 669 REM Transcription Factor Family AT2G24630 69.2 1.5e-265 912.9
Lac2g0428 . 1 706 REM Transcription Factor Family AT2G24630 64.1 3.1e-263 905.2
Lac6g0224 . 5 702 REM Transcription Factor Family AT2G24630 65.0 3.4e-257 885.2
Lac4g1933 . 5 693 REM Transcription Factor Family AT2G24630 62.3 4.6e-246 848.2
Lac9g1614 . 206 366 REM Transcription Factor Family AT1G49480 72.0 1.3e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33