Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2616 ATGGCCTTTCTCCTTCTCCTCTTCCTCTCTGCCTTCTCTCACACCGCCTCCGCCGCTCTCTCCGCCGACTACTACCGGAATTCTTGCCCTGCATTCTCTCAGATCATCCGCGACACCGTCACCAACAAGCAAATCACCACCCCGACCACTGCTGCCGCCACCCTCCGTCTCTTCTTCCACGACTGCCTCCCCAACGGCTGCGATGGCTCCGTCCTCATCTCCTCCACCTCCTTCAACGTCGCCGAGCGCGACGCCGACATCAACCTCTCCCTCCCTGGCGACGCCTTCGACGTCGTCGTCCGTGCCAAAACCGCCCTCGAACTCTCCTGCCCCAACACCGCCTCCTGCGCTGACATCCTCACCGCTGCCACTCGCGATCTCCTCACTATGGTCGGCGGCCCTTACTACACCGTCTTCCTTGGCCGCAAGGATGCGAAAGTTTCCAGAGCCTCCGCCATTGAAGGCACGCTCCCCAGACCCTCCATGTCCGTCTCTGAGATCATCGGCATCTTCGCCGCCAGAGGATTTTCCGTTCAGGAAATGGTGGCGCTAAGCGGCGCACATTCAATTGGCTTCTCGCATTGCAAGGAGTTCACCTCTGGGATATTCAATTACAGCAGATCCCCGCCCTACGACAGCCATTACAACCCTAGATTCGCATTAGGTTTACAGAGAGCCTGCGCCGATTACCAGAAGAATCCGACTCTGTCCGTTTTCAACGACATAATGACGCCGAACAAGTTCGACAACATGTATTTCAAGAATCTGCAGAAGGGGTTAGGGCTTCTGAAATCCGATGGCGGATTTTACAGCGATTCAAGAACACGGCCGTGGGTGGAGAAATACGCAGCAGATGAGAGCGGTTTCTTCGAGGCGTTTTCTCGAGCAATGGTGAAGCTCGGTGGCTATGGCGTCAAAGTGGGGAACGAAGGAGAGATTAGACGCAGGTGCGATGCCTTTAATTGA 966 56.31 MAFLLLLFLSAFSHTASAALSADYYRNSCPAFSQIIRDTVTNKQITTPTTAAATLRLFFHDCLPNGCDGSVLISSTSFNVAERDADINLSLPGDAFDVVVRAKTALELSCPNTASCADILTAATRDLLTMVGGPYYTVFLGRKDAKVSRASAIEGTLPRPSMSVSEIIGIFAARGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYSRSPPYDSHYNPRFALGLQRACADYQKNPTLSVFNDIMTPNKFDNMYFKNLQKGLGLLKSDGGFYSDSRTRPWVEKYAADESGFFEAFSRAMVKLGGYGVKVGNEGEIRRRCDAFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43756430 43757395 + Lag0030003.1 Lac8g2616 618450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2616 321 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 Gene3D - 23 321 - -
Lac8g2616 321 Gene3D Peroxidase, domain 2 158 300 - -
Lac8g2616 321 FunFam Peroxidase 23 167 - -
Lac8g2616 321 FunFam Peroxidase 158 300 - -
Lac8g2616 321 SUPERFAMILY Heme-dependent peroxidases 20 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 ProSiteProfiles Plant heme peroxidase family profile. 19 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lac8g2616 321 PANTHER - 3 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 Pfam Peroxidase 37 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2616 321 CDD secretory_peroxidase 20 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g2971 Lac-Chr2:47185608 Lac8g2616 Lac-Chr8:43756430 2.90E-61 dispersed
Lac7g1654 Lac-Chr7:20188180 Lac8g2616 Lac-Chr8:43756430 6.90E-19 dispersed
Lac8g0409 Lac-Chr8:5201816 Lac8g2616 Lac-Chr8:43756430 2.80E-130 dispersed
Lac8g2616 Lac-Chr8:43756430 Lac9g1086 Lac-Chr9:25580087 1.30E-78 dispersed
Lac10g0423 Lac-Chr10:3320953 Lac8g2616 Lac-Chr8:43756430 2.20E-105 wgd
Lac3g0672 Lac-Chr3:5237884 Lac8g2616 Lac-Chr8:43756430 1.40E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2616 K00430 - csv:105435603 553.903