Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2617 ATGGAGTTTCAGGAGGGTTTGATGAAGTTTATGGTTCATAGACACATTAAACATAACTGGGTTTTGGGGAAGGATTCTCCTGCGGTTGCAGTTTCAGAGATTACCAGTAGTCCTAGACGAAAATGGCGGATCTTCAGTCGGTCGTCTTCTTCCCCATTTCCGTCGAAACCCCAGTTTAAGGAAATACCCAAGGAATTGCTCTGCCCCATTTCTGGGTCTTTAATGGCGGACCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCTGCCTGTGTTCAAGTTTGCAAAGAGATAGGGTTGAAGCCGACTTTATTAGATGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTGGCTTTGAAATCCACCATTTTCAATTGGTGTAAGAACTCCTCTTCTGAACCCCCAAAACCCCTCGATTTCTCCTCTGCCGAAAAGCTTGTTCGTAAATTCATGGCGGTTCACCGCAAAAGCGATGAGGAATTGATTCAAGGGGTTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCTACCGAGGTCACTCGTCGGAAATCTCATTTCCACTCGAGCTCCGATGAATCTGTCGCTGCCGTTCCGACTCTGCCTCTTCCTCTCGCGACTCGGCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGAAATCGAGATCTCTACTCTGAACTCGCCTGAAGAAGAAGAGATCATCGCGAAGCTTAAGAGCCCTCAGGTTATTGAGATTGAAGAGGCTGTGATTACGCTGAGAAGAATTACGAGAACTCGAGAGGACACTAGGGTTCATCTCTGTTCTCCTATGATTCTCACTGTTCTGCGATCTCTCATCGTTTCAAGGTACAGCGGCGTTCAGGTGAATTCAGTTGCAGCGCTGGTGAATCTGTCTTTAGATAATATGAACAAGGTGAAGATCGTACGGTCGGGGATTCTCCCCAATTTGGTCGATGTTCTGAAAGGGGGTTCGCTGGAGGTTCAGGAACATGCCGCCGGCGCCATTTTCAGCTTGGCCCTCGCCGACGACAACAAAACGGCGATCGGCGTATTGGGTGCTCTGCCGCCATTGATACGGCTACTGGTATCCGACTCGGAGCAGACTCGGCACGACTCCGCTCTTGCTCTGTACCACTTATCGCACGTTCAGAGCAACTGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTTTTTCTCGGGATGGTAAAATCCGGCCACATGGCCGGCCGGATTCTGCTGATACTGTGCAATTTAGCAGCGTGTTTCGAGGGCCGGGCGGCGTTGTTGGACTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAGGGAGAACGAGTTGGACTCTGAGTCAACTCGGGAGAGTTGCGTGGCGGTTCTGTTTGGACTGAGTTACGGCGGTTTGAGGTTCAAGGGTCTGGCCAAAACCGCCGGGGCAATGGAGGTTTTCATGGCGGTGGAGAAAAACGGAAGTGAGAGATCAAAAGAGAAGGTCAAGAGGATCATGGAGTTGATGAAAGCCAGAGATGAGGTAGCTGAAGATGTGAATTGGGAGGAATTGCTTGACTCGGGTTGTTTCGGCAGCCGAACTCGGTGTCGAATCGGTGCCGGAATGGACAGGTCCACCGCGAACTCGTCCGAGTTCTGA 1650 51.03 MEFQEGLMKFMVHRHIKHNWVLGKDSPAVAVSEITSSPRRKWRIFSRSSSSPFPSKPQFKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKEIGLKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSEPPKPLDFSSAEKLVRKFMAVHRKSDEELIQGVAENPVVRFNHAATEVTRRKSHFHSSSDESVAAVPTLPLPLATRPSCCSSSSSSEIEISTLNSPEEEEIIAKLKSPQVIEIEEAVITLRRITRTREDTRVHLCSPMILTVLRSLIVSRYSGVQVNSVAALVNLSLDNMNKVKIVRSGILPNLVDVLKGGSLEVQEHAAGAIFSLALADDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNCSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMELMKARDEVAEDVNWEELLDSGCFGSRTRCRIGAGMDRSTANSSEF 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43757941 43759590 - Lag0030004.1 Lac8g2617 618451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2617 549 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g2617 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 133 IPR013083 -
Lac8g2617 549 FunFam RING-type E3 ubiquitin transferase 230 506 - -
Lac8g2617 549 Gene3D - 228 505 IPR011989 -
Lac8g2617 549 Pfam U-box domain 62 132 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g2617 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 313 350 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 SUPERFAMILY ARM repeat 235 487 IPR016024 -
Lac8g2617 549 PANTHER U BOX DOMAIN-CONTAINING 49 507 - -
Lac8g2617 549 SMART Ubox_2 65 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac8g2617 549 Pfam Armadillo/beta-catenin-like repeat 344 382 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 Pfam Armadillo/beta-catenin-like repeat 303 341 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 SUPERFAMILY RING/U-box 57 136 - -
Lac8g2617 549 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 354 396 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 SMART arm_5 343 383 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 SMART arm_5 423 466 IPR000225 GO:0005515(InterPro)
Lac8g2617 549 SMART arm_5 302 342 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2617 Lac-Chr8:43757941 Lac8g2874 Lac-Chr8:45883322 8.40E-09 dispersed
Lac10g0421 Lac-Chr10:3312646 Lac8g2617 Lac-Chr8:43757941 1.30E-80 wgd
Lac3g0670 Lac-Chr3:5215747 Lac8g2617 Lac-Chr8:43757941 4.90E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2617 - - - 0.0