Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2645 ATGAAGATCTCCAACTTGTTCGTCACATGGGTTTCTCTGAATCATCATCTTCTTCTCCTTCTACTTTTTGTTTCTTCATCTTTTGCTTCAGTTACAGAAGATGACATAAGGTGCCTTCGAGGGGTTAAGGATTCGCTCGAGGATCCTCTCGGAAGGCTCAGTTCCTGGGATTTCAAGAACACATCCGTCGGCAATCTCTGCAACAAATTCGTCGGCCTCTCCTGCTGGAACGACCGGGAGAATCGCATTCTGAGCCTCGAGCTCAAAGATATGAAGCTCGCCGGGTCGATTTCCGAGGAGTTGCAGTACTGCGTGAGCCTGCAGAGACTGGATCTGTCCGGCAATACCTTTTCCGGCGAGATCCCGCCGCATATTTGTAAGTGGCTTCCCTATTTGGTTAGCTTGGATTTGTCGAACAACCGTTTTACAGGTCCTATTCCGGCTGATCTTGCTGGATGTTCTTATCTGAATTCGTTGATTTTGTCTGATAATGGCCTTACCGGGACTATACCAGTTGAGCTTACCAGTTTGGGTAGGCTTAACAAATTTTCTGTTGCGAACAATCAGCTCACTGGTACGATTCCCTCATTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAACAGTGACTTGTGTGGAGAGCCTGTTGGATCGAGTTGTGGTGGGTTGAGCAAGAAGAATCTTGCGATTATTATAGCTGCTGGTGTGTTTGGTGCTGCGGCTTCTTTGTTGTTAGGTTTTGGGTTGTGGTGGTGGTATCACTCTAGAATGAACATGAAGAAGAGAAGGGGGTATGGGGATGGGCTTAGTGGGGATTGGGCTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGGCTGCTACTAACAATTTCAATTCTGATAATATAATAGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTTCCTGATGGCTCTGTGCTCGCTATAAAGCGACTCAATACCTGCAAGCTCGGCGAGAAGCTGTTTCGGATGGAGATGAACCGGTTAGGATTGATCAGGCACCCGAATTTGACACCCCTTTTAGGGTTCTGTGTTGTGGAGGAGGAAAAGCTTTTGGTTTATAAGTACATGTGTAATGGGACTTTATCCTCTTTGTTACATGGAAATGATGAGATATTGGATTGGCCAACTAGGTTTAGGATCGGTTTTGGTGCCGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCTCCATTCATGCATCAAAACATATGTTCAAGTGTAATTCTTGTGGATGATGACTATGATGCTAGGATCATGGATTTTGGATTGGCGAGGTTGATGGCTTCGGATTCTCACGGCAGTAGCTTTGTGAATGGAGATTTAGGGGAACTTGGTTACGTCGCTCCCGAATATCCGAGCACCATGGTTGCTTCTCTGAAAGGAGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGTTGATCACTGGCCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGCTAAGTATTTCAGGTCGAATTAAGGATGTTATCGATAAAGATCTTTGTGGAAAAGGAAACGACGAGGAAATCTTACAATTCCTGAAGATTACAATGAACTGCACTGTTTCTCGGCCCAAGGACAGGTGGTCTATGTATCAGGTTTATCAGTCAATGAAAGCAATGGCTAAAGACTACAGTTTCTCTGAACCAGATGATGAGTTCCCACTTTTACTCGGCAAGGGAGACAACGAGCCCGTGTAG 1824 44.85 MKISNLFVTWVSLNHHLLLLLLFVSSSFASVTEDDIRCLRGVKDSLEDPLGRLSSWDFKNTSVGNLCNKFVGLSCWNDRENRILSLELKDMKLAGSISEELQYCVSLQRLDLSGNTFSGEIPPHICKWLPYLVSLDLSNNRFTGPIPADLAGCSYLNSLILSDNGLTGTIPVELTSLGRLNKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGEPVGSSCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRRGYGDGLSGDWADRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNSDNIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMCNGTLSSLLHGNDEILDWPTRFRIGFGAARGLAWLHHGCQPPFMHQNICSSVILVDDDYDARIMDFGLARLMASDSHGSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSISGRIKDVIDKDLCGKGNDEEILQFLKITMNCTVSRPKDRWSMYQVYQSMKAMAKDYSFSEPDDEFPLLLGKGDNEPV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43970511 43972334 + Lag0030032.1 Lac8g2645 618479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2645 607 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Lac8g2645 607 Pfam Protein tyrosine and serine/threonine kinase 332 515 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2645 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 32 222 - -
Lac8g2645 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 582 IPR046959 -
Lac8g2645 607 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515(InterPro)
Lac8g2645 607 ProSiteProfiles Protein kinase domain profile. 308 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2645 607 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Lac8g2645 607 SUPERFAMILY Protein kinase-like (PK-like) 285 578 IPR011009 -
Lac8g2645 607 SUPERFAMILY L domain-like 32 209 - -
Lac8g2645 607 Gene3D Phosphorylase Kinase; domain 1 269 382 - -
Lac8g2645 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 270 382 - -
Lac8g2645 607 Gene3D Ribonuclease Inhibitor 32 223 IPR032675 -
Lac8g2645 607 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 383 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1067 Lac-Chr4:26227490 Lac8g2645 Lac-Chr8:43970511 2.70E-34 dispersed
Lac4g1855 Lac-Chr4:37861223 Lac8g2645 Lac-Chr8:43970511 2.70E-111 dispersed
Lac8g2645 Lac-Chr8:43970511 Lac4g2713 Lac-Chr4:46096893 9.70E-59 dispersed
Lac8g2645 Lac-Chr8:43970511 Lac1g2432 Lac-Chr1:45792759 6.10E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86396 PF07714 PK_Tyr_Ser-Thr 2.20E-28 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2645 - - - 0.0