Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2666 | ATGGGTTTGGCTCCTAATGACTCGAAGGTCGAGACATGGATTGAGGGCAAGGCAAGAATGGCCAGCGAGAAGAAGAAGAAGAAGGAAAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATTGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATAGTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACCCATTGCGATAGTAAATCTAAACTCGACGAAAAAAGAGATATTCTGGTTACTGCATTGGGGTCATCAGCGACAACTGATAATGCTGAAAGTAGCTCGTCCACGCCCAAGCTTAGTGCTGAGCTGAAGGTTGCTTCTCGGCTTCGTAAGTTCACTTTTAATGAGCTTAAGTTAGCCACAAGAAATTTCAGACCTGAAAGCCTTCTTGGCGAGGGGGGTTTTGGTTGCGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACGGTTGCAGTGAAGACTCTTAATCATGACGGTCTACAAGGTCACAAAGAGTGGATGGCTGAAGTTAACTTCCTTGGTGACCTCAACCATTCTAATCTTGTAAGGTTGATTGGTTGCTGCATTGAAGACGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAAAACCACCTCTTCAGAAGGCCCTTGCCACTTCCTTGGTCAATAAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTGTTAGATGCGGATTACAACGCTAAACTCTCAGATTTTGGACTTGCAAAAGATGGTCCTGAGGGTGACAAAACTCATGTTTCAACTCGGGTTATGGGAACATATGGCTATGCAGCTCCAGAATATGTAATGACTGGGCATTTGACATCAAAAAGTGATGTCTACAGTTTTGGAGTTGTCTTGCTCGAAATGCTAACTGGTCGAAGATCGATGGATAAAAATAGACCGAATGGGGAGCACAACCTTGTTGAGTGGGCTAGACCCCTACTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGCCTCGAATGTCACTTCTCAATCAAAGGTGCACAAAAAGCTGCAGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTGTTATGAGTGAAGTTGTTGAAACTCTAAAACCCTTGCCAAACCTCAAGGACATGGCGAGTTCTTCCTATTACTTCCAAACCATGCAAGCAGACCGTGCCAGGTCCAACCCCAATGCTAAAAGTGTCGTCCGCACGCAGTCGATGTTTGTGGCAAGGAACGGGCAACACGTTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCATATAATTATCCTCATCAGTCACCAAAACCTGACAGGAGATAA | 1470 | 44.69 | MGLAPNDSKVETWIEGKARMASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKSKLDEKRDILVTALGSSATTDNAESSSSTPKLSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARSNPNAKSVVRTQSMFVARNGQHVRSLSSPNGPHASPYNYPHQSPKPDRR | 489 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 44158979 | 44163425 | + | Lag0030053.1 | Lac8g2666 | 618500 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2666 | 489 | PANTHER | OS01G0588500 PROTEIN-RELATED | 106 | 419 | IPR050823 | - | |
| Lac8g2666 | 489 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 264 | 276 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac8g2666 | 489 | SUPERFAMILY | Protein kinase-like (PK-like) | 112 | 415 | IPR011009 | - | |
| Lac8g2666 | 489 | Pfam | Protein tyrosine and serine/threonine kinase | 139 | 415 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lac8g2666 | 489 | ProSiteProfiles | Protein kinase domain profile. | 135 | 421 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lac8g2666 | 489 | ProSitePatterns | Protein kinases ATP-binding region signature. | 141 | 173 | IPR017441 | GO:0005524(InterPro) | |
| Lac8g2666 | 489 | MobiDBLite | consensus disorder prediction | 458 | 477 | - | - | |
| Lac8g2666 | 489 | CDD | STKc_IRAK | 141 | 418 | - | - | |
| Lac8g2666 | 489 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
| Lac8g2666 | 489 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Lac8g2666 | 489 | FunFam | Probable serine/threonine-protein kinase PBL8 | 221 | 436 | - | - | |
| Lac8g2666 | 489 | FunFam | Serine/threonine-protein kinase BIK1 | 102 | 220 | - | - | |
| Lac8g2666 | 489 | Gene3D | Transferase(Phosphotransferase) domain 1 | 221 | 438 | - | - | |
| Lac8g2666 | 489 | Gene3D | Phosphorylase Kinase; domain 1 | 109 | 220 | - | - | |
| Lac8g2666 | 489 | MobiDBLite | consensus disorder prediction | 458 | 489 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g1776 | Lac-Chr1:39260720 | Lac8g2666 | Lac-Chr8:44158979 | 1.70E-54 | dispersed | |
| Lac3g0772 | Lac-Chr3:6186824 | Lac8g2666 | Lac-Chr8:44158979 | 7.90E-140 | dispersed | |
| Lac6g2185 | Lac-Chr6:38344438 | Lac8g2666 | Lac-Chr8:44158979 | 4.00E-70 | dispersed | |
| Lac6g2910 | Lac-Chr6:46718557 | Lac8g2666 | Lac-Chr8:44158979 | 1.20E-140 | dispersed | |
| Lac6g3106 | Lac-Chr6:48487171 | Lac8g2666 | Lac-Chr8:44158979 | 3.70E-112 | dispersed | |
| Lac8g2666 | Lac-Chr8:44158979 | Lac9g2468 | Lac-Chr9:43564786 | 1.50E-126 | dispersed | |
| Lac13g0284 | Lac-Chr13:2035816 | Lac8g2666 | Lac-Chr8:44158979 | 2.90E-202 | wgd | |
| Lac8g2666 | Lac-Chr8:44158979 | Lac9g2257 | Lac-Chr9:41932067 | 1.30E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86397 | PF07714 | PK_Tyr_Ser-Thr | 9.40E-48 | CL0016 | Lac | PK |
Pathway information