Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2671 ATGGGAGTGACGTTTGATGGTTTTTTGTTTGGTTTTGCAGATGGGGTCGTCCCGCTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGATTGTCTGACGACGGATCGGCTTTGGGAGAGAAGAAGAAGAGGTTAAATTTAGAGCAAGTTAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAACAAGCTGGAGCCTGAGAGGAAAATGCAGCTGGCCAAAGCTCTGGGGTTGCAGCCGAGACAGATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAGAGATTACGAGGTGTTGAAGAAACAGTTTGAAGCTCTCAAGGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCGGTGGCAGGCGGCGGCGCCACCGTGAACCTAAAGAAAGAAAACGAACGTTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTCGACATCTCAAGAACACAAGCACCGATAACAGGCGGCGGCGGCGGCGGAAGAGCATGTTCCCAACCTGGAATCAAGGAGCTGTTCCCGTCGGCAGCCGCGGCGGCCGCGTTCCGATCGGCCGCCATAACGCAGCTGCTGCAACACGGCTCTTCAAGATCAAGCGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCGGTCAAATGTTCAATGGAATGGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA 837 50.66 MGVTFDGFLFGFADGVVPLMMKRSMSFSGVENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAVAGGGATVNLKKENERCWSSDNSCDINLDISRTQAPITGGGGGGRACSQPGIKELFPSAAAAAAFRSAAITQLLQHGSSRSSVDHPQVIQEESFGQMFNGMEEQQQTAAAAGFWPWSSDQNSHFH 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44187497 44189503 - Lag0030058.1 Lac8g2671 618505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2671 278 SMART HOX_1 51 112 IPR001356 GO:0003677(InterPro)
Lac8g2671 278 Coils Coil 100 141 - -
Lac8g2671 278 MobiDBLite consensus disorder prediction 258 278 - -
Lac8g2671 278 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677(InterPro)
Lac8g2671 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 198 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lac8g2671 278 Pfam Homeodomain 53 106 IPR001356 GO:0003677(InterPro)
Lac8g2671 278 CDD homeodomain 53 109 IPR001356 GO:0003677(InterPro)
Lac8g2671 278 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac8g2671 278 Gene3D - 46 122 - -
Lac8g2671 278 FunFam Homeobox-leucine zipper protein ATHB-13 45 112 - -
Lac8g2671 278 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677(InterPro)
Lac8g2671 278 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677(InterPro)
Lac8g2671 278 SUPERFAMILY Homeodomain-like 47 110 IPR009057 -
Lac8g2671 278 Pfam Homeobox associated leucine zipper 108 148 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2802 Lac-Chr1:49109105 Lac8g2671 Lac-Chr8:44187497 1.30E-25 dispersed
Lac5g1909 Lac-Chr5:37430543 Lac8g2671 Lac-Chr8:44187497 5.10E-25 dispersed
Lac8g1538 Lac-Chr8:32998377 Lac8g2671 Lac-Chr8:44187497 5.70E-09 dispersed
Lac8g2600 Lac-Chr8:43637896 Lac8g2671 Lac-Chr8:44187497 1.80E-20 dispersed
Lac8g2671 Lac-Chr8:44187497 Lac11g0744 Lac-Chr11:7786545 6.80E-07 dispersed
Lac10g0375 Lac-Chr10:2929338 Lac8g2671 Lac-Chr8:44187497 2.30E-25 wgd
Lac13g0301 Lac-Chr13:2133202 Lac8g2671 Lac-Chr8:44187497 3.10E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24349 PF00046 Homeodomain 2.50E-15 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2671 K09338 - csv:101212093 468.388