Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2671 | ATGGGAGTGACGTTTGATGGTTTTTTGTTTGGTTTTGCAGATGGGGTCGTCCCGCTGATGATGAAGAGATCGATGTCGTTTTCGGGAGTCGAAAACGGGTGCGAGGAAGTGAATGGCGACGAGGGATTGTCTGACGACGGATCGGCTTTGGGAGAGAAGAAGAAGAGGTTAAATTTAGAGCAAGTTAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAACAAGCTGGAGCCTGAGAGGAAAATGCAGCTGGCCAAAGCTCTGGGGTTGCAGCCGAGACAGATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAGAGATTACGAGGTGTTGAAGAAACAGTTTGAAGCTCTCAAGGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGGCGGTGGCAGGCGGCGGCGCCACCGTGAACCTAAAGAAAGAAAACGAACGTTGTTGGAGCAGCGACAACAGTTGCGACATCAACCTCGACATCTCAAGAACACAAGCACCGATAACAGGCGGCGGCGGCGGCGGAAGAGCATGTTCCCAACCTGGAATCAAGGAGCTGTTCCCGTCGGCAGCCGCGGCGGCCGCGTTCCGATCGGCCGCCATAACGCAGCTGCTGCAACACGGCTCTTCAAGATCAAGCGTGGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCGGTCAAATGTTCAATGGAATGGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCAGATCAAAATTCCCATTTTCATTAA | 837 | 50.66 | MGVTFDGFLFGFADGVVPLMMKRSMSFSGVENGCEEVNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGEAVAGGGATVNLKKENERCWSSDNSCDINLDISRTQAPITGGGGGGRACSQPGIKELFPSAAAAAAFRSAAITQLLQHGSSRSSVDHPQVIQEESFGQMFNGMEEQQQTAAAAGFWPWSSDQNSHFH | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 44187497 | 44189503 | - | Lag0030058.1 | Lac8g2671 | 618505 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2671 | 278 | SMART | HOX_1 | 51 | 112 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | Coils | Coil | 100 | 141 | - | - | |
Lac8g2671 | 278 | MobiDBLite | consensus disorder prediction | 258 | 278 | - | - | |
Lac8g2671 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 48 | 108 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 30 | 198 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Lac8g2671 | 278 | Pfam | Homeodomain | 53 | 106 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | CDD | homeodomain | 53 | 109 | IPR001356 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 83 | 106 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lac8g2671 | 278 | Gene3D | - | 46 | 122 | - | - | |
Lac8g2671 | 278 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 45 | 112 | - | - | |
Lac8g2671 | 278 | PRINTS | Lambda-repressor HTH signature | 79 | 88 | IPR000047 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | PRINTS | Lambda-repressor HTH signature | 88 | 104 | IPR000047 | GO:0003677(InterPro) | |
Lac8g2671 | 278 | SUPERFAMILY | Homeodomain-like | 47 | 110 | IPR009057 | - | |
Lac8g2671 | 278 | Pfam | Homeobox associated leucine zipper | 108 | 148 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2802 | Lac-Chr1:49109105 | Lac8g2671 | Lac-Chr8:44187497 | 1.30E-25 | dispersed | |
Lac5g1909 | Lac-Chr5:37430543 | Lac8g2671 | Lac-Chr8:44187497 | 5.10E-25 | dispersed | |
Lac8g1538 | Lac-Chr8:32998377 | Lac8g2671 | Lac-Chr8:44187497 | 5.70E-09 | dispersed | |
Lac8g2600 | Lac-Chr8:43637896 | Lac8g2671 | Lac-Chr8:44187497 | 1.80E-20 | dispersed | |
Lac8g2671 | Lac-Chr8:44187497 | Lac11g0744 | Lac-Chr11:7786545 | 6.80E-07 | dispersed | |
Lac10g0375 | Lac-Chr10:2929338 | Lac8g2671 | Lac-Chr8:44187497 | 2.30E-25 | wgd | |
Lac13g0301 | Lac-Chr13:2133202 | Lac8g2671 | Lac-Chr8:44187497 | 3.10E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24349 | PF00046 | Homeodomain | 2.50E-15 | CL0123 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2671 | K09338 | - | csv:101212093 | 468.388 |