Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2681 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCCCCAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCCGACAGTGATACTCCGACCAGGATCCCGCCCTCTTCCGCCAAGTCGCTGCCTTTCAGTAACGGCGTTCTCAAGCGCCACCACTCCCACCCCCGTCAACCGGTGGTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGCTTAGGCGCCCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCTTCCGCCACGCCCACTGATCCCACATCGCTCAAGTGCGCTGCGTGCGGCTGTCACCGCAATTTCCACCGTCGGGAGCCGGACGAGCCGATTTCCACGTTAGCTATCAATACGGCGGCGACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCGCCGATGGCTGGCAACCGGAGCCCGAACTCGGCGTCGCCGCCGCCGATCTCGTCTTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACACGCGAATTCGGTGCTGACGCCGAGCCCAAACACCCGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAGAAAATGCTCCATTTCGCGGAACGAGTGGGATGGAAAATGCAGAAGAGAGACGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACCGCCACACCCACCACAGCCGCCGCCGCCGCAACCGCCGCCGTCAACAATGAAGATGGACCAGATGGGGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 942 56.79 MFREVCVFERAMDLAPAAITTSSNNTKSPEPDSDTPTRIPPSSAKSLPFSNGVLKRHHSHPRQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPDEPISTLAINTAATHVIEYQPHHRHHPPPPPMAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAHANSVLTPSPNTRKRFRTKFTNEQKEKMLHFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTDTNGATATPTTAAAAATAAVNNEDGPDGGLHMHVGSNGSSSSS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44329078 44330019 - Lag0030068.1 Lac8g2681 618515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2681 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Lac8g2681 313 MobiDBLite consensus disorder prediction 141 170 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 183 206 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 18 49 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 264 287 - -
Lac8g2681 313 SUPERFAMILY Homeodomain-like 201 268 IPR009057 -
Lac8g2681 313 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 120 IPR006456 -
Lac8g2681 313 NCBIfam homeobox domain, ZF-HD class 207 264 IPR006455 -
Lac8g2681 313 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Lac8g2681 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 265 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac8g2681 313 MobiDBLite consensus disorder prediction 18 60 - -
Lac8g2681 313 FunFam Zinc-finger homeodomain protein 2 194 268 - -
Lac8g2681 313 Gene3D - 195 268 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 264 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2792 Lac-Chr1:49009692 Lac8g2681 Lac-Chr8:44329078 8.80E-35 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac8g2681 Lac-Chr8:44329078 2.20E-33 dispersed
Lac8g0622 Lac-Chr8:10283075 Lac8g2681 Lac-Chr8:44329078 4.00E-74 transposed
Lac10g0077 Lac-Chr10:608039 Lac8g2681 Lac-Chr8:44329078 2.00E-12 wgd
Lac13g0317 Lac-Chr13:2274851 Lac8g2681 Lac-Chr8:44329078 2.60E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24352 PF04770 ZF-HD_dimer 3.60E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2681 - - - 0.0