Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2681 ATGTTTAGAGAGGTTTGTGTTTTTGAGAGAGCCATGGATTTAGCCCCAGCTGCCATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCCGACAGTGATACTCCGACCAGGATCCCGCCCTCTTCCGCCAAGTCGCTGCCTTTCAGTAACGGCGTTCTCAAGCGCCACCACTCCCACCCCCGTCAACCGGTGGTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGCTTAGGCGCCCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCTTCCGCCACGCCCACTGATCCCACATCGCTCAAGTGCGCTGCGTGCGGCTGTCACCGCAATTTCCACCGTCGGGAGCCGGACGAGCCGATTTCCACGTTAGCTATCAATACGGCGGCGACTCATGTGATCGAGTATCAGCCGCACCACCGGCACCACCCGCCTCCCCCGCCGATGGCTGGCAACCGGAGCCCGAACTCGGCGTCGCCGCCGCCGATCTCGTCTTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTTTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAACGCACACGCGAATTCGGTGCTGACGCCGAGCCCAAACACCCGGAAACGGTTCAGGACGAAATTCACGAACGAGCAAAAGGAGAAAATGCTCCATTTCGCGGAACGAGTGGGATGGAAAATGCAGAAGAGAGACGAGGATTTGGTTCGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTCTCAAAGTATGGATGCATAACAACAAGAACACCATGGGAAAAAAGACCGACACCAATGGCGCCACCGCCACACCCACCACAGCCGCCGCCGCCGCAACCGCCGCCGTCAACAATGAAGATGGACCAGATGGGGGCTTGCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 942 56.79 MFREVCVFERAMDLAPAAITTSSNNTKSPEPDSDTPTRIPPSSAKSLPFSNGVLKRHHSHPRQPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRREPDEPISTLAINTAATHVIEYQPHHRHHPPPPPMAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENAHANSVLTPSPNTRKRFRTKFTNEQKEKMLHFAERVGWKMQKRDEDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKTDTNGATATPTTAAAAATAAVNNEDGPDGGLHMHVGSNGSSSSS 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44329078 44330019 - Lag0030068.1 Lac8g2681 618515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2681 313 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Lac8g2681 313 MobiDBLite consensus disorder prediction 141 170 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 183 206 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 18 49 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 264 287 - -
Lac8g2681 313 SUPERFAMILY Homeodomain-like 201 268 IPR009057 -
Lac8g2681 313 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 120 IPR006456 -
Lac8g2681 313 NCBIfam homeobox domain, ZF-HD class 207 264 IPR006455 -
Lac8g2681 313 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Lac8g2681 313 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 265 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lac8g2681 313 MobiDBLite consensus disorder prediction 18 60 - -
Lac8g2681 313 FunFam Zinc-finger homeodomain protein 2 194 268 - -
Lac8g2681 313 Gene3D - 195 268 - -
Lac8g2681 313 MobiDBLite consensus disorder prediction 264 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2681 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2792 Lac-Chr1:49009692 Lac8g2681 Lac-Chr8:44329078 8.80E-35 dispersed
Lac6g0980 Lac-Chr6:8846096 Lac8g2681 Lac-Chr8:44329078 2.20E-33 dispersed
Lac8g0622 Lac-Chr8:10283075 Lac8g2681 Lac-Chr8:44329078 4.00E-74 transposed
Lac10g0077 Lac-Chr10:608039 Lac8g2681 Lac-Chr8:44329078 2.00E-12 wgd
Lac13g0317 Lac-Chr13:2274851 Lac8g2681 Lac-Chr8:44329078 2.60E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac13g2376 . 85 294 ZF-HD Transcription Factor Family AT2G02540 55.3 4.7e-49 192.6
Lac5g1919 . 44 210 ZF-HD Transcription Factor Family AT4G24660 53.3 1.9e-47 186.8
Lac8g2681 . 12 269 ZF-HD Transcription Factor Family AT5G39760 54.9 1.9e-51 200.7
Lac8g0622 . 1 256 ZF-HD Transcription Factor Family AT5G39760 61.7 3.9e-49 193.0
Lac1g2918 . 97 328 ZF-HD Transcription Factor Family AT2G18350 51.9 1.1e-54 211.1
Lac6g0980 . 52 247 ZF-HD Transcription Factor Family AT5G65410 55.1 1.1e-44 177.9
Lac8g2681 . 67 266 ZF-HD Transcription Factor Family AT1G69600 50.7 2.0e-47 186.8
Lac8g2681 . 17 263 ZF-HD Transcription Factor Family AT5G15210 56.5 5.2e-52 202.2
Lac8g0622 . 1 263 ZF-HD Transcription Factor Family AT5G15210 53.4 1.2e-48 191.0
Lac13g2376 . 85 297 ZF-HD Transcription Factor Family AT1G14440 50.9 6.6e-51 198.7
Lac13g2376 . 85 296 ZF-HD Transcription Factor Family AT1G75240 55.0 1.6e-36 151.0
Lac8g2681 . 10 278 ZF-HD Transcription Factor Family AT3G28920 59.6 5.7e-63 238.8
Lac8g0622 . 1 258 ZF-HD Transcription Factor Family AT3G28920 62.1 1.8e-56 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24352 PF04770 ZF-HD_dimer 3.60E-29 No_clan Lac TF