Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2693 ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACCAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCGACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGTGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTTGTTGTTCGTTCAACATTCATTTTTTGGTTTTTTAATGGGTGAGATAATGGCTGACAAGAATTTGGAAGATGGTGATATTGAGCCTGCTCCAAAGCTTATTCAAGTTGTCTTTCAAAACTGCAAAGGTCAAGTGGATCAATGGATTGAACCGTATCTCAGAATCACAATTGAACGCCTGCAACGAACTGAGAAGTCATACTTGAAGTGTCTTCTAATGCAAGTGGTAAGGGTTGAGGAGGGTGAAGGGAAACTTGAAAGACAATACCGTATGAACTGTATAGGTTGTGGACTCTTTGTGTGTTATCGCTCAGAGGAAGATTTGGAATTTGCTTCTTTCATTTATGTTGTTGATGGTGCTCTTAGTACAGTGGCTGCTGAAACCAATCCCCAGATTGCTGATGCCCTTTACTACAATGCATCATTATCAGTCAGCATATTGCACAAGCTAGGTGTTGCAACAAATGTATTCAATCTTTGGTTTCAGATGCTGCAACAGGTTAAAAAGAGTGGAGTACGAGCTAATTTTAGAAGGGAACAAGATAAAAAAGTTTGCTGCTTGGGATTGACATCATTGCTTGCACTACCAGCCGATCAATTACCAGGGGAGGCTCTTGGGCGTGTTTTTAGGGCCACCCTTGATCTTCTTATTGCATACAAGGATCAAGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGTCGGAAGAGTGTAGAAGGAGTTGTGTACTTATTTTACTTTTTCTTTGTAAATTAG 1428 50.98 MSASDAATNNAAIIDHPQHRHTQQQPNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGDKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAAGGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQALLFVQHSFFGFLMGEIMADKNLEDGDIEPAPKLIQVVFQNCKGQVDQWIEPYLRITIERLQRTEKSYLKCLLMQVVRVEEGEGKLERQYRMNCIGCGLFVCYRSEEDLEFASFIYVVDGALSTVAAETNPQIADALYYNASLSVSILHKLGVATNVFNLWFQMLQQVKKSGVRANFRREQDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLIAYKDQVADDEMDILEKELEEELGRKSVEGVVYLFYFFFVN 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44409848 44412986 - Lag0030080.1 Lac8g2693 618527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2693 475 MobiDBLite consensus disorder prediction 39 54 - -
Lac8g2693 475 MobiDBLite consensus disorder prediction 1 36 - -
Lac8g2693 475 SUPERFAMILY ARM repeat 231 447 IPR016024 -
Lac8g2693 475 MobiDBLite consensus disorder prediction 107 130 - -
Lac8g2693 475 MobiDBLite consensus disorder prediction 1 54 - -
Lac8g2693 475 Pfam TCP family transcription factor 42 118 IPR017887 -
Lac8g2693 475 Gene3D - 207 465 IPR011989 -
Lac8g2693 475 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 145 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Lac8g2693 475 ProSiteProfiles TCP domain profile. 42 96 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1703 Lac-Chr5:34346919 Lac8g2693 Lac-Chr8:44409848 1.40E-74 dispersed
Lac8g2693 Lac-Chr8:44409848 Lac9g0377 Lac-Chr9:6697201 1.40E-57 dispersed
Lac10g0580 Lac-Chr10:4467516 Lac8g2693 Lac-Chr8:44409848 1.10E-24 transposed
Lac10g2715 Lac-Chr10:41590663 Lac8g2693 Lac-Chr8:44409848 5.80E-199 transposed
Lac13g0918 Lac-Chr13:7574322 Lac8g2693 Lac-Chr8:44409848 3.20E-59 transposed
Lac8g2023 Lac-Chr8:38700712 Lac8g2693 Lac-Chr8:44409848 1.60E-111 transposed
Lac5g2885 Lac-Chr5:47098031 Lac8g2693 Lac-Chr8:44409848 8.50E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24353 PF03634 TCP 4.10E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2693 K16221 - csv:101214586 299.286