Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2693 | ATGTCCGCCTCCGACGCCGCCACCAACAATGCCGCCATAATCGACCATCCCCAACACAGACATACCCAACAACAACCAAATCAGACTTCCAACAATGGCGCTTTAGCCGTCAAGAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCCGCCGTATTCGTATGCCCATCATCTGCGCCGCTCGCGTCTTCCAACTCACCCGCGAGTTGGGCGACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACTGGCACCGGCACCACTCCTGCTAGCTTCTCCACTATCTCCGCCTCCCTCCGCGGCGGTCCCACTGCCGCCGCTTCCTCTTCTTCCTCCCCTTCTCTCGACCACAAGCCGCTTCTCGCTCCCGCGCCCTTCATTCTCGGCAAGCGCGTCAGGACCGACGACGATGGAGGGAGTAAAGACGACGGCGGCGGTGGCGCTGGTGTTGGCATTTCGGTTGGACCCTCTGTCGGTTCGATTATGGGTCCGGCTGCCGCGGGTGGGTACTGGGCGATTCCTGCGAGGCCGGATTTCGGACAGGTGTGGAGCTTCGCCGCCGCCGCGGCTCCCGAGATGGTGATTCAGCCGGCGGCGGTTTCTCATCAGGCGTTGTTGTTCGTTCAACATTCATTTTTTGGTTTTTTAATGGGTGAGATAATGGCTGACAAGAATTTGGAAGATGGTGATATTGAGCCTGCTCCAAAGCTTATTCAAGTTGTCTTTCAAAACTGCAAAGGTCAAGTGGATCAATGGATTGAACCGTATCTCAGAATCACAATTGAACGCCTGCAACGAACTGAGAAGTCATACTTGAAGTGTCTTCTAATGCAAGTGGTAAGGGTTGAGGAGGGTGAAGGGAAACTTGAAAGACAATACCGTATGAACTGTATAGGTTGTGGACTCTTTGTGTGTTATCGCTCAGAGGAAGATTTGGAATTTGCTTCTTTCATTTATGTTGTTGATGGTGCTCTTAGTACAGTGGCTGCTGAAACCAATCCCCAGATTGCTGATGCCCTTTACTACAATGCATCATTATCAGTCAGCATATTGCACAAGCTAGGTGTTGCAACAAATGTATTCAATCTTTGGTTTCAGATGCTGCAACAGGTTAAAAAGAGTGGAGTACGAGCTAATTTTAGAAGGGAACAAGATAAAAAAGTTTGCTGCTTGGGATTGACATCATTGCTTGCACTACCAGCCGATCAATTACCAGGGGAGGCTCTTGGGCGTGTTTTTAGGGCCACCCTTGATCTTCTTATTGCATACAAGGATCAAGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGTCGGAAGAGTGTAGAAGGAGTTGTGTACTTATTTTACTTTTTCTTTGTAAATTAG | 1428 | 50.98 | MSASDAATNNAAIIDHPQHRHTQQQPNQTSNNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGDKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGGPTAAASSSSSPSLDHKPLLAPAPFILGKRVRTDDDGGSKDDGGGGAGVGISVGPSVGSIMGPAAAGGYWAIPARPDFGQVWSFAAAAAPEMVIQPAAVSHQALLFVQHSFFGFLMGEIMADKNLEDGDIEPAPKLIQVVFQNCKGQVDQWIEPYLRITIERLQRTEKSYLKCLLMQVVRVEEGEGKLERQYRMNCIGCGLFVCYRSEEDLEFASFIYVVDGALSTVAAETNPQIADALYYNASLSVSILHKLGVATNVFNLWFQMLQQVKKSGVRANFRREQDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLIAYKDQVADDEMDILEKELEEELGRKSVEGVVYLFYFFFVN | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 44409848 | 44412986 | - | Lag0030080.1 | Lac8g2693 | 618527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2693 | 475 | MobiDBLite | consensus disorder prediction | 39 | 54 | - | - | |
Lac8g2693 | 475 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Lac8g2693 | 475 | SUPERFAMILY | ARM repeat | 231 | 447 | IPR016024 | - | |
Lac8g2693 | 475 | MobiDBLite | consensus disorder prediction | 107 | 130 | - | - | |
Lac8g2693 | 475 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Lac8g2693 | 475 | Pfam | TCP family transcription factor | 42 | 118 | IPR017887 | - | |
Lac8g2693 | 475 | Gene3D | - | 207 | 465 | IPR011989 | - | |
Lac8g2693 | 475 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 20 | 145 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
Lac8g2693 | 475 | ProSiteProfiles | TCP domain profile. | 42 | 96 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g1703 | Lac-Chr5:34346919 | Lac8g2693 | Lac-Chr8:44409848 | 1.40E-74 | dispersed | |
Lac8g2693 | Lac-Chr8:44409848 | Lac9g0377 | Lac-Chr9:6697201 | 1.40E-57 | dispersed | |
Lac10g0580 | Lac-Chr10:4467516 | Lac8g2693 | Lac-Chr8:44409848 | 1.10E-24 | transposed | |
Lac10g2715 | Lac-Chr10:41590663 | Lac8g2693 | Lac-Chr8:44409848 | 5.80E-199 | transposed | |
Lac13g0918 | Lac-Chr13:7574322 | Lac8g2693 | Lac-Chr8:44409848 | 3.20E-59 | transposed | |
Lac8g2023 | Lac-Chr8:38700712 | Lac8g2693 | Lac-Chr8:44409848 | 1.60E-111 | transposed | |
Lac5g2885 | Lac-Chr5:47098031 | Lac8g2693 | Lac-Chr8:44409848 | 8.50E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24353 | PF03634 | TCP | 4.10E-29 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2693 | K16221 | - | csv:101214586 | 299.286 |